Science Enabled by Specimen Data

Qu, J., Xu, Y., Cui, Y., Wu, S., Wang, L., Liu, X., … Wang, X. (2021). MODB: a comprehensive mitochondrial genome database for Mollusca. Database, 2021. doi:10.1093/database/baab056 https://doi.org/10.1093/database/baab056

Mollusca is the largest marine phylum, comprising about 23% of all named marine organisms, Mollusca systematics are still in flux, and an increase in human activities has affected Molluscan reproduction and development, strongly impacting diversity and classification. Therefore, it is necessary to e…

Arfianti, T., & Costello, M. J. (2021). The distribution of benthic amphipod crustaceans in Indonesian seas. PeerJ, 9, e12054. doi:10.7717/peerj.12054 https://doi.org/10.7717/peerj.12054

Amphipod crustaceans are an essential component of tropical marine biodiversity. However, their distribution and biogeography have not been analysed in one of the world’s largest tropical countries nested in the Coral Triangle, Indonesia. We collected and identified amphipod crustaceans from eight s…

Miller, E. F., Green, R. E., Balmford, A., Maisano Delser, P., Beyer, R., Somveille, M., … Manica, A. (2021). Bayesian Skyline Plots disagree with range size changes based on Species Distribution Models for Holarctic birds. Molecular Ecology. doi:10.1111/mec.16032 https://doi.org/10.1111/mec.16032

During the Quaternary, large climate oscillations impacted the distribution and demography of species globally. Two approaches have played a major role in reconstructing changes through time: Bayesian Skyline Plots (BSPs), which reconstruct population fluctuations based on genetic data, and Species …

Hughes, A. C., Orr, M. C., Ma, K., Costello, M. J., Waller, J., Provoost, P., … Qiao, H. (2021). Sampling biases shape our view of the natural world. Ecography. doi:10.1111/ecog.05926 https://doi.org/10.1111/ecog.05926

Spatial patterns of biodiversity are inextricably linked to their collection methods, yet no synthesis of bias patterns or their consequences exists. As such, views of organismal distribution and the ecosystems they make up may be incorrect, undermining countless ecological and evolutionary studies.…

Martin, D., Aguado, M. T., Fernández Álamo, M.-A., Britayev, T. A., Böggemann, M., Capa, M., … Teixeira, M. A. L. (2021). On the Diversity of Phyllodocida (Annelida: Errantia), with a Focus on Glyceridae, Goniadidae, Nephtyidae, Polynoidae, Sphaerodoridae, Syllidae, and the Holoplanktonic Families. Diversity, 13(3), 131. doi:10.3390/d13030131 https://doi.org/10.3390/d13030131

Phyllodocida is a clade of errantiate annelids characterized by having ventral sensory palps, anterior enlarged cirri, axial muscular proboscis, compound chaetae (if present) with a single ligament, and of lacking dorsolateral folds. Members of most families date back to the Carboniferous, although …

Oegelund Nielsen, R., da Silva, R., Juergens, J., Staerk, J., Lindholm Sørensen, L., Jackson, J., … Conde, D. A. (2020). Standardized data to support conservation prioritization for sharks and batoids (Elasmobranchii). Data in Brief, 33, 106337. doi:10.1016/j.dib.2020.106337 https://doi.org/10.1016/j.dib.2020.106337

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Li, X., Li, B., Wang, G., Zhan, X., & Holyoak, M. (2020). Deeply digging the interaction effect in multiple linear regressions using a fractional-power interaction term. MethodsX, 7, 101067. doi:10.1016/j.mex.2020.101067 https://doi.org/10.1016/j.mex.2020.101067

In multiple regression Y ~ β0 + β1X1 + β2X2 + β3X1 X2 + ɛ., the interaction term is quantified as the product of X1 and X2. We developed fractional-power interaction regression (FPIR), using βX1M X2N as the interaction term. The rationale of FPIR is that the slopes of Y-X1 regression along the X2 gr…

Liu, X., Blackburn, T. M., Song, T., Wang, X., Huang, C., & Li, Y. (2020). Animal invaders threaten protected areas worldwide. Nature Communications, 11(1). doi:10.1038/s41467-020-16719-2 https://doi.org/10.1038/s41467-020-16719-2

Protected areas are the cornerstone of biodiversity conservation. However, alien species invasion is an increasing threat to biodiversity, and the extent to which protected areas worldwide are resistant to incursions of alien species remains poorly understood. Here, we investigate establishment by 8…

Hastings, R. A., Rutterford, L. A., Freer, J. J., Collins, R. A., Simpson, S. D., & Genner, M. J. (2020). Climate Change Drives Poleward Increases and Equatorward Declines in Marine Species. Current Biology. doi:10.1016/j.cub.2020.02.043 https://doi.org/10.1016/j.cub.2020.02.043

Marine environments have increased in temperature by an average of 1°C since pre-industrial (1850) times [1]. Given that species ranges are closely allied to physiological thermal tolerances in marine organisms [2], it may therefore be expected that ocean warming would lead to abundance increases at…

Arfianti, T., & Costello, M. (2020). Global biogeography of marine amphipod crustaceans: latitude, regionalization, and beta diversity. Marine Ecology Progress Series, 638, 83–94. doi:10.3354/meps13272 https://doi.org/10.3354/meps13272

Studying the biogeography of amphipod crustaceans is of interest because they play an important role at lower trophic levels in ecosystems. Because they lack a planktonic larval stage, it has been hypothesized that marine benthic amphipod crustaceans may have short dispersal distances, high endemici…