Science Enabled by Specimen Data

Tu, W., Y. Du, Y. E. Stuart, Y. Li, Y. Wang, Q. Wu, B. Guo, and X. Liu. 2024. Biological invasion is eroding the unique assembly of island herpetofauna worldwide. Biological Conservation 300: 110853. https://doi.org/10.1016/j.biocon.2024.110853

Island ecosystems have significant conservation value owing to their higher endemic biotas. Moreover, studies of regional communities that compare differences in species composition (species dissimilarity) among islands and the mainland suggest that community assembly on islands is different from that on the mainland. However, the uniqueness of island biotic assembly has been little studied at the global scale, nor have phylogenetic information or alien species been considered in these patterns. We evaluate taxonomic and phylogenetic change from one community to the next, focusing on differences in species composition between mainland-mainland (M-M) pairs compared to differences between mainland-island pairs (M-I) and between island-island pairs (I-I), using herpetofauna on islands and adjacent mainland areas worldwide. Our analyses detect greater taxonomic and phylogenetic dissimilarity for M-I and I-I comparisons than predicted by M-M model, indicating different island herpetofauna assembly patterns compared with mainland counterparts across the world. However, this higher M-I dissimilarity has been significantly decreased after considering alien species. Our results provide global evidence on the importance of island biodiversity conservation from the aspect of both the taxonomic and phylogenetic uniqueness of island biotic assembly.

Graham, K. K., P. Glaum, J. Hartert, J. Gibbs, E. Tucker, R. Isaacs, and F. S. Valdovinos. 2024. A century of wild bee sampling: historical data and neural network analysis reveal ecological traits associated with species loss. Proceedings of the Royal Society B: Biological Sciences 291. https://doi.org/10.1098/rspb.2023.2837

We analysed the wild bee community sampled from 1921 to 2018 at a nature preserve in southern Michigan, USA, to study long-term community shifts in a protected area. During an intensive survey in 1972 and 1973, Francis C. Evans detected 135 bee species. In the most recent intensive surveys conducted in 2017 and 2018, we recorded 90 species. Only 58 species were recorded in both sampling periods, indicating a significant shift in the bee community. We found that the bee community diversity, species richness and evenness were all lower in recent samples. Additionally, 64% of the more common species exhibited a more than 30% decline in relative abundance. Neural network analysis of species traits revealed that extirpation from the reserve was most likely for oligolectic ground-nesting bees and kleptoparasitic bees, whereas polylectic cavity-nesting bees were more likely to persist. Having longer phenological ranges also increased the chance of persistence in polylectic species. Further analysis suggests a climate response as bees in the contemporary sampling period had a more southerly overall distribution compared to the historic community. Results exhibit the utility of both long-term data and machine learning in disentangling complex indicators of bee population trajectories.

da Silva, C. R. B., and S. E. Diamond. 2024. Local climate change velocities and evolutionary history explain multidirectional range shifts in a North American butterfly assemblage. Journal of Animal Ecology 93: 1160–1171. https://doi.org/10.1111/1365-2656.14132

Species are often expected to shift their distributions either poleward or upslope to evade warming climates and colonise new suitable climatic niches. However, from 18‐years of fixed transect monitoring data on 88 species of butterfly in the midwestern United States, we show that butterflies are shifting their centroids in all directions, except towards regions that are warming the fastest (southeast).Butterflies shifted their centroids at a mean rate of 4.87 km year−1. The rate of centroid shift was significantly associated with local climate change velocity (temperature by precipitation interaction), but not with mean climate change velocity throughout the species' ranges.Species tended to shift their centroids at a faster rate towards regions that are warming at slower velocities but increasing in precipitation velocity.Surprisingly, species' thermal niche breadth (range of climates butterflies experience throughout their distribution) and wingspan (often used as metric for dispersal capability) were not correlated with the rate at which species shifted their ranges.We observed high phylogenetic signal in the direction species shifted their centroids. However, we found no phylogenetic signal in the rate species shifted their centroids, suggesting less conserved processes determine the rate of range shift than the direction species shift their ranges.This research shows important signatures of multidirectional range shifts (latitudinal and longitudinal) and uniquely shows that local climate change velocities are more important in driving range shifts than the mean climate change velocity throughout a species' entire range.

Li, Y., Y. Wang, and X. Liu. 2024. Half of global islands have reached critical area thresholds for undergoing rapid increases in biological invasions. Proceedings of the Royal Society B: Biological Sciences 291. https://doi.org/10.1098/rspb.2024.0844

Biological invasions are among the threats to global biodiversity and social sustainability, especially on islands. Identifying the threshold of area at which non-native species begin to increase abruptly is crucial for early prevention strategies. The small-island effect (SIE) was proposed to quantify the nonlinear relationship between native species richness and area but has not yet been applied to non-native species and thus to predict the key breakpoints at which established non-native species start to increase rapidly. Based on an extensive global dataset, including 769 species of non-native birds, mammals, amphibians and reptiles established on 4277 islands across 54 archipelagos, we detected a high prevalence of SIEs across 66.7% of archipelagos. Approximately 50% of islands have reached the threshold area and thus may be undergoing a rapid increase in biological invasions. SIEs were more likely to occur in those archipelagos with more non-native species introduction events, more established historical non-native species, lower habitat diversity and larger archipelago area range. Our findings may have important implications not only for targeted surveillance of biological invasions on global islands but also for predicting the responses of both non-native and native species to ongoing habitat fragmentation under sustained land-use modification and climate change.

Krivosheeva, V., A. Solodovnikov, A. Shulepov, D. Semerikova, A. Ivanova, and M. Salnitska. 2023. Assessment of the DNA barcode libraries for the study of the poorly-known rove beetle (Staphylinidae) fauna of West Siberia. Biodiversity Data Journal 11. https://doi.org/10.3897/bdj.11.e115477

Staphylinidae, or rove beetles, are one of the mega-diverse and abundant families of the ground-living terrestrial arthropods that is taxonomically poorly known even in the regions adjacent to Europe where the fauna has been investigated for the longest time. Since DNA barcoding is a tool to accelerate biodiversity research, here we explored if the currently-available COI barcode libraries are representative enough for the study of rove beetles of West Siberia. This is a vast region adjacent to Europe with poorly-known fauna of rove beetles and from where not a single DNA barcode has hitherto been produced for Staphylinidae. First, we investigated the faunal similarity between the rove beetle faunas of the climatically compatible West Siberia in Asia, Fennoscandia in Europe and Canada and Alaska in North America. Second, we investigated barcodes available for Staphylinidae from the latter two regions in BOLD and GenBank, the world's largest DNA barcode libraries. We conclude that the rather different rove beetle faunas of Fennoscandia, on the one hand and Canada and Alaska on the other hand, are well covered in both barcode libraries that complement each other. We also find that even without any barcodes originating from specimens collected in West Siberia, this coverage is helpful for the study of rove beetles there due to the significant number of widespread species shared between West Siberia and Fennoscandia and due to the even larger number of shared genera amongst all three investigated regions. For the first time, we compiled a literature-based checklist for 726 species of the West Siberian Staphylinidae supplemented by their occurrence dataset submitted to GBIF. Our script written for mining unique (i.e. not redundant) barcodes for a given geographic area across global libraries is made available here and can be adopted for any other regions.

Kebaïli, C., S. Sherpa, M. Guéguen, J. Renaud, D. Rioux, and L. Després. 2023. Comparative genetic and demographic responses to climate change in three peatland butterflies in the Jura massif. Biological Conservation 287: 110332. https://doi.org/10.1016/j.biocon.2023.110332

Climate is a main driver of species distributions, but all species are not equally affected by climate change, and their differential responses to similar climatic constraints might dramatically affect the local species composition. In the context of climate warming, a better knowledge of the ability of dispersal-limited and habitat-specialist species to track climate change at local scale is urgently needed. Comparing the population genetic and demographic impacts of past climate cycles in multiple co-distributed species with similar ecological requirements help predicting the community-scale response to climate warming, but such comparative studies remain rare. Here, we studied the relationship between demographic history and past changes in spatial distribution of three protected peatland butterfly species (Boloria aquilonaris, Coenonympha tullia, Lycaena helle) in the Jura massif (France), using a genomic approach (ddRAD sequencing) and species distribution modeling (SDM). We found a similar and narrow thermal niche among species, and shared demographic histories of post-glacial decline and recent fragmentation of populations. Each species functions as a single metapopulation at the regional scale, with a North-South gradient of decreasing genetic diversity that fits the local dynamics of the ice cover over time. However, we found no correlation between changes in the quantity or the quality of suitable areas and changes in effective population size over time. This suggests that species ranges moved beyond the Jura massif during the less favorable climatic periods, and/or that habitat loss and deterioration are major drivers of the current dramatic decline observed in the three species. Our findings allow better understanding how history events and contemporary dynamics shape local biodiversity, providing valuable knowledge to identify appropriate conservation strategies.

Sánchez‐Campaña, C., C. Múrria, V. Hermoso, D. Sánchez‐Fernández, J. M. Tierno de Figueroa, M. González, A. Millán, et al. 2023. Anticipating where are unknown aquatic insects in Europe to improve biodiversity conservation. Diversity and Distributions. https://doi.org/10.1111/ddi.13714

Aim Understanding biodiversity patterns is crucial for prioritizing future conservation efforts and reducing the current rates of biodiversity loss. However, a large proportion of species remain undescribed (i.e. unknown biodiversity), hindering our ability to conduct this task. This phenomenon, known as the ‘Linnean shortfall’, is especially relevant in highly diverse, yet endangered, taxonomic groups, such as insects. Here we explore the distributions of recently described freshwater insect species in Europe to (1) infer the potential location of unknown biodiversity hotspots and (2) determine the variables that can anticipate the distribution of unknown biodiversity. Location The European continent, including western Russia, Cyprus and Turkey. Methods Georeferenced information of all sites where new aquatic insect species were described across Europe from 2000 to 2020 was compiled. In order to understand the observed spatial patterns in richness of recently described species, spatial units were defined (level 6 of HydroBASINS) and associated with a combination of a set of socioeconomic, environmental and sampling effort descriptors. A zero-inflated Poisson regression approach was used to model the richness of newly described species within each spatial unit. Results Nine hundred and sixty-six recently described species were found: 398 Diptera, 362 Trichoptera, 105 Coleoptera, 66 Plecoptera, 28 Ephemeroptera, 3 Neuroptera, 2 Lepidoptera and 2 Odonata. The Mediterranean Basin was the region with the highest number of recently described species (74%). The richness of recently described species per spatial unit across Europe was highest at mid-elevation areas (between 400 and 1000 m), latitudes between 40 and 50° and in areas with yearly average precipitation levels of 500–1000 mm, a medium intensity of sampling effort and low population density. The percentage of protected areas in each study unit was not significantly related to the richness of recently described species. In fact, 70% of the species were found outside protected areas. Main conclusions The results highlight the urgent need to concentrate conservation efforts in freshwater ecosystems located at mid-altitude areas and out of protected areas across the Mediterranean Basin. The highest number of newly described species in those areas indicates that further monitoring efforts are required to ensure the aquatic biodiversity is adequately known and managed within a context of growing human impacts in freshwater ecosystems.

Li, X., and J. J. Wiens. 2022. Estimating Global Biodiversity: the Role of Cryptic Insect Species. Systematic Biology. https://doi.org/10.1093/sysbio/syac069

Abstract How many species are there on Earth and to what groups do these species belong? These fundamental questions span systematics, ecology, and evolutionary biology. Yet, recent estimates of overall global biodiversity have ranged wildly, from the low millions to the trillions. Insects are a pivotal group for these estimates. Insects make up roughly half of currently described extant species (across all groups), with ~1 million described species. Insect diversity is also crucial because many other taxa have species that may be unique to each insect host species, including bacteria, apicomplexan protists, microsporidian fungi, nematodes, and mites. Several projections of total insect diversity (described and undescribed) have converged on ~6 million species. However, these projections have not incorporated the morphologically cryptic species revealed by molecular data. Here, we estimate the extent of cryptic insect diversity. We perform a systematic review of studies that used explicit species-delimitation methods with multi-locus data. We estimate that each morphology-based insect species contains (on average) 3.1 cryptic species. We then use these estimates to project the overall number of species on Earth and their distribution among major groups. Our estimates suggest that overall global biodiversity may range from 563 million to 2.2 billion species. [Biodiversity; cryptic species; insects; species delimitation; species richness]

Gil‐Tapetado, D., C. D. Soria, J. F. Gómez, J. M. Sesma, and F. J. Cabrero‐Sañudo. 2022. Aridity could have driven the local extinction of a common and multivoltine butterfly. Ecological Entomology. https://doi.org/10.1111/een.13200

Identifying which species are being negatively impacted by climate change and the mechanisms driving their decline is essential to effectively protect biodiversity.Coenonympha pamphilus is a common and generalist butterfly, widely distributed throughout the Western Palearctic, being multivoltine in southern Europe. Previous studies indicate that it will not be substantially affected by climate change; however, it has seemingly disappeared from the southeast of the Iberian Peninsula in the last decades.Here, we aim to determine if it has effectively disappeared from this area, as well as identify the environmental conditions limiting its distribution and the potential causes behind this a priori local extinction.We downloaded all the occurrence records of C. pamphilus and analysed their spatial and temporal trends. To identify the climatic variables driving the distribution of this butterfly in the Iberian Peninsula, we performed an ensemble species distribution model (SDM), combining 600 individual models produced with 6 algorithms.We confirmed that C. pamphilus has not been observed in the southeast of the Iberian Peninsula since 2008. Aridity was the main factor limiting the distribution of C. pamphilus in our ensemble SDM, with areas with high aridity being unsuitable for this species.We hypothesise that multivoltinism is the mechanism driving this local extirpation, as high aridity is causing host plants (Poaceae) to wither prematurely, precluding the development of the second and/or third generations of the butterfly. Even though generalist species are theoretically more resilient to climate change, other traits such as multivoltinism may increase their vulnerability and need to be further investigated.

Li, D., Z. Li, Z. Liu, Y. Yang, A. G. Khoso, L. Wang, and D. Liu. 2022. Climate change simulations revealed potentially drastic shifts in insect community structure and crop yields in China’s farmland. Journal of Pest Science. https://doi.org/10.1007/s10340-022-01479-3

Climate change will cause drastic fluctuations in agricultural ecosystems, which in turn may affect global food security. We used ecological niche modeling to predict the potential distribution for four cereal aphids (i.e., Sitobion avenae, Rhopalosiphum padi, Schizaphis graminum, and Diurphis noxia…