Science Enabled by Specimen Data

Seaborn, T., E. J. Crespi, and C. S. Goldberg. 2025. Variation in dispersal traits and geography predict loss of ranges due to climate change in cold-adapted amphibians. Biodiversity and Conservation 34: 1311–1334. https://doi.org/10.1007/s10531-025-03019-8

Dispersal ability may play a major role in determining whether a species will persist under climate change. We used models of dispersal, employing a wide range of intrinsic species-specific dispersal factors, in conjunction with ecological niche models (ENM) and climate predictions to simulate whether distributions of North American cold-adapted amphibians will increase or decrease, and which aspects of dispersal most influence this prediction. We used ENM values as a proxy for habitat suitability, predicted a changing climate under three shared socio-economic pathways (SSP2-4.5, SSP3-7.0, and SSP5-8.5) representing three carbon emission scenarios, and conducted a sensitivity analysis on the effect of dispersal factors on range dynamics. We then used simulations focused only on the southern edge of ranges to determine the likelihood of individuals colonizing towards the core. Predicted range shifts depended on emission scenario, dispersal factors, and species’ initial geography. Inclusion of dispersal parameters was critical in predicting range shifts, in particular for high carbon-emission scenarios where contraction was more likely than expansion, although specific responses varied with species initial geography. Dispersal distance, probability of dispersal, and long-distance dispersal were often the most important parameters for predicting final range size. Similarly, dispersal parameters results in complete loss to complete emigration of southern range individuals towards the core. These models predict that for some species in the more rapid warming scenarios, translocation efforts will be needed to mitigate potential loss of genetic variation at the southern edges and the overall size of the species’ ranges unless carbon emissions are reduced.

Venegas-Barrera, C. S., J. Manjarrez, Á. Rodríguez-Moreno, Y. A. Mendoza-Walle, J. V. Horta-Vega, I. R. Rodríguez-deLeón, A. Sunny, and A. Azuara Domínguez. 2024. Representativeness, Complementarity, and Degree of Local Extirpation Risk for Thamnophis Species Inside and Outside of Protected Areas of Mexico. Ecologies 5: 697–715. https://doi.org/10.3390/ecologies5040041

Protected areas (PAs) are geographical spaces intended to conserve populations, communities, and ecosystems, in which species richness must be maximized, the conserved area must be minimized, and anthropogenic pressure must be reduced. The present study analyzed the representativeness, complementarity, and degree of risk of 25 garter snake species of the genus Thamnophis in the PAs of Mexico. This study proposes that at least 17% of the potential geographic distribution (PGD) of species will be found inside PAs and in areas (Aichi Target 11) with a low human footprint (HF). The PGD of species was associated with the PAs and HF layers to identify where and which species could be at local extirpation risk by human activities. The results indicate that the federal PAs contain 85.2% of the species, while the state PAs contain 77.7% of the species. An average of 13.4% of the PGD of these species is found inside PAs, and two species are found outside. In 13 federal PAs and 10 state PAs, the Thamnophis species present high local extirpation risk from human activities. In total, 37% of species are found in PAs with a medium to very high human footprint; therefore, their persistence could be at local extirpation risk. Compared to other taxa, species of the genus Thamnophis are well represented. However, the PDG of more than half of the species achieves Aichi Target 11.

Turkalj, J., and A. Tomik. 2024. Status review of the Pallid Harrier Circus macrourus in Croatia: a new wintering species. Larus : godišnjak Zavoda za ornitologiju Hrvatske akademije znanosti i umjetnosti: 97–103. https://doi.org/10.21857/ypn4oc4xk9

The Pallid Harrier Circus macrourus is a long-distance migratory species whose westward expansion into Europe began in the early 21st century. Although historically rare in Croatia, an increase in observations since 2016 has led to its recognition as an irregular species, particularly during spring and autumn migration. Most recorded sightings are of adult males, and recent reports have documented the first wintering individuals in the country. This study compiles and reviews 98 unique records of Pallid Harrier observations in Croatia between 1872 and 2024, revealing a significant increase in sightings, particularly since 2016. Collected data supports the suggested loop migration in this species, with differing sex ratios observed across seasons. The wintering birds have been observed in agricultural fields in the continental region. Given the consistency of records in recent years, we propose that the Pallid Harrier be reclassified from an irregular to a regular passage species and irregular wintering bird in Croatia.

Lubbers, K. E., J. X. Samuels, and T. A. Joyner. 2024. Species distribution modeling of North American beavers from the late Pliocene into the future J. Scheibe [ed.],. Journal of Mammalogy. https://doi.org/10.1093/jmammal/gyae131

Abstract Beavers have occurred in North America since at least 7 Ma, but relatively little is known about their distribution across the continent. We modeled distributions of beavers in the late Pliocene (3.3 Ma), Pleistocene (130 ka and 21 ka), and recent Holocene (1970 to 2000) to understand their dispersal across North America, predict future distributions and predict their possible response to future climate and habitat changes. Occurrence data for Castor canadensis were derived from the Global Biodiversity Information Facility. Those data were used with both modern (1970 to 2000) and modeled future (EC-Earth-Veg 2081 to 2100) bioclimatic variables from WorldClim as well as past (Pliocene Marine Isotope Stage M2, Pleistocene Last Interglacial, and Pleistocene Last Glacial Maximum) bioclimatic variables from PaleoClim to model beaver distributions through time. Fossil locality points for Castor extracted from the New and Old Worlds Database of Fossil Mammals (NOW), NEOTOMA Paleoecology Database, and Paleobiology Database were overlain on past projection models to use as validation points. Models were run using MaxEnt with post-processing in ArcGIS. Accuracy for the 5 models ranged between 59.6% and 60.2%. Results for the present model (1970 to 2000) showed habitat suitability in areas beavers inhabit today. During the Pliocene MIS M2 cooling event (3.3 Ma) and Pleistocene Last Glacial Maximum (21 ka), habitat suitability shifted further south into Mexico and peninsular Florida and away from more periglacial northern regions. During the Last Interglacial period (130 ka) and modeled future (2081 to 2100) EC-Earth-Veg 2081 to 2100, habitat suitability was higher in coastal and central regions in North America and lower in southern regions compared to their present distribution. Distributions were most affected by precipitation seasonality, isothermality, and mean annual temperature. High variability in seasonal precipitation and temperatures is likely to influence surface water availability, vegetation type, and riparian vegetation composition, which consequently may reduce available food resources and habitat for beavers. Observed shifts during warmer periods may indicate areas in the late Miocene that facilitated dispersal into North America. Future models using other predicted climatic scenarios and shared socioeconomic pathways may provide better resolution of potential future shifts in beaver distribution with best- and worst-case climate scenarios, thereby permitting at-risk areas to be prioritized for conservation in the face of climate change.

Tu, W., Y. Du, Y. E. Stuart, Y. Li, Y. Wang, Q. Wu, B. Guo, and X. Liu. 2024. Biological invasion is eroding the unique assembly of island herpetofauna worldwide. Biological Conservation 300: 110853. https://doi.org/10.1016/j.biocon.2024.110853

Island ecosystems have significant conservation value owing to their higher endemic biotas. Moreover, studies of regional communities that compare differences in species composition (species dissimilarity) among islands and the mainland suggest that community assembly on islands is different from that on the mainland. However, the uniqueness of island biotic assembly has been little studied at the global scale, nor have phylogenetic information or alien species been considered in these patterns. We evaluate taxonomic and phylogenetic change from one community to the next, focusing on differences in species composition between mainland-mainland (M-M) pairs compared to differences between mainland-island pairs (M-I) and between island-island pairs (I-I), using herpetofauna on islands and adjacent mainland areas worldwide. Our analyses detect greater taxonomic and phylogenetic dissimilarity for M-I and I-I comparisons than predicted by M-M model, indicating different island herpetofauna assembly patterns compared with mainland counterparts across the world. However, this higher M-I dissimilarity has been significantly decreased after considering alien species. Our results provide global evidence on the importance of island biodiversity conservation from the aspect of both the taxonomic and phylogenetic uniqueness of island biotic assembly.

Pilliod, D. S., M. I. Jeffries, R. S. Arkle, and D. H. Olson. 2024. Climate Futures for Lizards and Snakes in Western North America May Result in New Species Management Issues. Ecology and Evolution 14. https://doi.org/10.1002/ece3.70379

We assessed changes in fundamental climate‐niche space for lizard and snake species in western North America under modeled climate scenarios to inform natural resource managers of possible shifts in species distributions. We generated eight distribution models for each of 130 snake and lizard species in western North America under six time‐by‐climate scenarios. We combined the highest‐performing models per species into a single ensemble model for each scenario. Maps were generated from the ensemble models to depict climate‐niche space for each species and scenario. Patterns of species richness based on climate suitability and niche shifts were calculated from the projections at the scale of the entire study area and individual states and provinces, from Canada to Mexico. Squamate species' climate‐niche space for the recent‐time climate scenario and published known ranges were highly correlated (r = 0.81). Overall, reptile climate‐niche space was projected to move northward in the future. Sixty‐eight percent of species were projected to expand their current climate‐niche space rather than to shift, contract, or remain stable. Only 8.5% of species were projected to lose climate‐niche space in the future, and these species primarily occurred in Mexico and the southwestern U.S. We found few species were projected to lose all suitable climate‐niche space at the state or province level, although species were often predicted to occupy novel areas, such as at higher elevations. Most squamate species were projected to increase their climate‐niche space in future climate scenarios. As climate niches move northward, species are predicted to cross administrative borders, resulting in novel conservation issues for local landowners and natural resource agencies. However, information on species dispersal abilities, landscape connectivity, biophysical tolerances, and habitat suitability is needed to contextualize predictions relative to realized future niche expansions.

Cheeseman, A. E., D. S. Jachowski, and R. Kays. 2024. From past habitats to present threats: tracing North American weasel distributions through a century of climate and land use change. Landscape Ecology 39. https://doi.org/10.1007/s10980-024-01902-3

Context Shifts in climate and land use have dramatically reshaped ecosystems, impacting the distribution and status of wildlife populations. For many species, data gaps limit inference regarding population trends and links to environmental change. This deficiency hinders our ability to enact meaningful conservation measures to protect at risk species. Objectives We investigated historical drivers of environmental niche change for three North American weasel species (American ermine, least weasel, and long-tailed weasel) to understand their response to environmental change. Methods Using species occurrence records and corresponding environmental data, we developed species-specific environmental niche models for the contiguous United States (1938–2021). We generated annual hindcasted predictions of the species’ environmental niche, assessing changes in distribution, area, and fragmentation in response to environmental change. Results We identified a 54% decline in suitable habitat alongside high levels of fragmentation for least weasels and region-specific trends for American ermine and long-tailed weasels; declines in the West and increased suitability in the East. Climate and land use were important predictors of the environmental niche for all species. Changes in habitat amount and distribution reflected widespread land use changes over the past century while declines in southern and low-elevation areas are consistent with impacts from climatic change. Conclusions Our models uncovered land use and climatic change as potential historic drivers of population change for North American weasels and provide a basis for management recommendations and targeted survey efforts. We identified potentially at-risk populations and a need for landscape-level planning to support weasel populations amid ongoing environmental changes.

Luna-Aranguré, C., and E. Vázquez-Domínguez. 2024. Bears into the Niche-Space: Phylogeography and Phyloclimatic Model of the Family Ursidae. Diversity 16: 223. https://doi.org/10.3390/d16040223

Assessing niche evolution remains an open question and an actively developing area of study. The family Ursidae consists of eight extant species for which, despite being the most studied family of carnivores, little is known about the influence of climate on their evolutionary history and diversification. We evaluated their evolutionary patterns based on a combined phylogeography and niche modeling approach. We used complete mitogenomes, estimated divergence times, generated ecological niche models and applied a phyloclimatic model to determine the species evolutionary and diversification patterns associated with their respective environmental niches. We inferred the family evolutionary path along the environmental conditions of maximum temperature and minimum precipitation, from around 20 million years ago to the present. Our findings show that the phyloclimatic niches of the bear species occupy most of the environmental space available on the planet, except for the most extreme warm conditions, in accordance with the wide geographic distribution of Ursidae. Moreover, some species exhibit broader environmental niches than others, and in some cases, they explore precipitation axes more extensively than temperature axes or vice versa, suggesting that not all species are equally adaptable to these variables. We were able to elucidate potential patterns of niche conservatism and evolution, as well as niche overlapping, suggesting interspecific competitive exclusion between some of the bear species. We present valuable insights into the ecological and evolutionary processes driving the diversification and distribution of the Ursidae. Our approach also provides essential information for guiding effective conservation strategies, particularly in terms of distribution limits in the face of climate change.

Rojas‐Soto, O., J. S. Forero‐Rodríguez, A. Galindo‐Cruz, C. Mota‐Vargas, K. D. Parra‐Henao, A. Peña‐Peniche, J. Piña‐Torres, et al. 2024. Calibration areas in ecological niche and species distribution modelling: Unravelling approaches and concepts. Journal of Biogeography. https://doi.org/10.1111/jbi.14834

AbstractAimThe calibration area (CA) corresponds to the geographic region used by different algorithms that estimate the species' environmental preferences and delimit its geographic distribution. This study intended to identify, test and compare current literature's most commonly employed approaches and methods for CA creation, highlighting the differences with the accessible area (M), a frequently misapplied concept.LocationGlobal.TaxonArthropods, amphibians, reptiles, birds and mammals.MethodsWe conducted a literature review and analysed 129 recent articles on species distribution that use correlative models to identify the methods used to establish the CA and their frequency. We also evaluated seven of the most widely used methods for 31 species from different taxa.ResultsWe found that the most frequently used methods in literature corresponded to biogeographic entities (BE). Moreover, according to our evaluation, those methods that seek to establish the CA through the accessible area approach (including BE and ‘grinnell’) were the best evaluated. Finally, we highlight the advantages and disadvantages of the analysed methods in selecting CA.Main ConclusionsAlthough we cannot fail to recognize the usefulness and validity of the different methods to establish CAs, we suggest calibrating ecological niche and species distribution models in light of explicit a priori hypotheses regarding the extent of accessible areas (M) as a delimitation of the CA, which theoretically includes the species' dispersal ability and its barriers. We recommend using the BE method, which is simple to establish and highly operational.

Mamba, H. S., and T. O. Randhir. 2024. Exploring temperature and precipitation changes under future climate change scenarios for black and white rhinoceros populations in Southern Africa. Biodiversity 25: 52–64. https://doi.org/10.1080/14888386.2023.2291133

Climate change is a potential human-induced threat to rhino populations and their habitat. Information on the effects of climate change on rhinoceros species can help manage and develop conservation plans to adapt to these changes. In this study, two climate change scenarios were used to predict temperature and precipitation changes in national parks in southern Africa and the effect those changes would have on black (Diceros bicornis) and white (Ceratotherium simum) rhinoceros populations. The study used the Intergovernmental Panel on Climate Change (IPCC) Representative Concentration Pathways (RCPs) 4.5 and 8.5, atmospheric CO2 concentrations of 650 and 1370 ppm, for the years 2055 and 2085 to explore the temperature and precipitation changes. All spatial information was processed using Geographic Information Systems and statistical analysis. Results show the changing climate will have significant negative impacts on the probability of occurrence of both species. Temperature changes will affect these probabilities more than precipitation changes. All study parks will have zero probability of occurrence for the species throughout their ranges should conditions reach those represented by the RCP 8.5 scenario late in the century. Conservation activities for the rhinoceros should take into consideration the potential for temperature and precipitation changes modelled in this study.