Science Enabled by Specimen Data
Cosentino, F., E. C. J. Seamark, V. Van Cakenberghe, and L. Maiorano. 2023. Not only climate: The importance of biotic interactions in shaping species distributions at macro scales. Ecology and Evolution 13. https://doi.org/10.1002/ece3.9855
Abiotic factors are usually considered key drivers of species distribution at macro scales, while biotic interactions are mostly used at local scales. A few studies have explored the role of biotic interactions at macro scales, but all considered a limited number of species and obligate interactions. We examine the role of biotic interactions in large‐scale SDMs by testing two main hypotheses: (1) biotic factors in SDMs can have an important role at continental scale; (2) the inclusion of biotic factors in large‐scale SDMs is important also for generalist species. We used a maximum entropy algorithm to model the distribution of 177 bat species in Africa calibrating two SDMs for each species: one considering only abiotic variables (noBIO‐SDMs) and the other (BIO‐SDMs) including also biotic variables (trophic resource richness). We focused the interpretation of our results on variable importance and response curves. For each species, we also compared the potential distribution measuring the percentage of change between the two models in each pixel of the study area. All models gave AUC >0.7, with values on average higher in BIO‐SDMs compared to noBIO‐SDMs. Trophic resources showed an importance overall higher level than all abiotic predictors in most of the species (~68%), including generalist species. Response curves were highly interpretable in all models, confirming the ecological reliability of our models. Model comparison between the two models showed a change in potential distribution for more than 80% of the species, particularly in tropical forests and shrublands. Our results highlight the importance of considering biotic interactions in SDMs at macro scales. We demonstrated that a generic biotic proxy can be important for modeling species distribution when species‐specific data are not available, but we envision that a multi‐scale analysis combined with a better knowledge of the species might provide a better understanding of the role of biotic interactions.
Antonelli, A., R. J. Smith, A. L. Perrigo, A. Crottini, J. Hackel, W. Testo, H. Farooq, et al. 2022. Madagascar’s extraordinary biodiversity: Evolution, distribution, and use. Science 378. https://doi.org/10.1126/science.abf0869
Madagascar’s biota is hyperdiverse and includes exceptional levels of endemicity. We review the current state of knowledge on Madagascar’s past and current terrestrial and freshwater biodiversity by compiling and presenting comprehensive data on species diversity, endemism, and rates of species description and human uses, in addition to presenting an updated and simplified map of vegetation types. We report a substantial increase of records and species new to science in recent years; however, the diversity and evolution of many groups remain practically unknown (e.g., fungi and most invertebrates). Digitization efforts are increasing the resolution of species richness patterns and we highlight the crucial role of field- and collections-based research for advancing biodiversity knowledge and identifying gaps in our understanding, particularly as species richness corresponds closely to collection effort. Phylogenetic diversity patterns mirror that of species richness and endemism in most of the analyzed groups. We highlight humid forests as centers of diversity and endemism because of their role as refugia and centers of recent and rapid radiations. However, the distinct endemism of other areas, such as the grassland-woodland mosaic of the Central Highlands and the spiny forest of the southwest, is also biologically important despite lower species richness. The documented uses of Malagasy biodiversity are manifold, with much potential for the uncovering of new useful traits for food, medicine, and climate mitigation. The data presented here showcase Madagascar as a unique “living laboratory” for our understanding of evolution and the complex interactions between people and nature. The gathering and analysis of biodiversity data must continue and accelerate if we are to fully understand and safeguard this unique subset of Earth’s biodiversity.
Yousefi, M., A. Mahmoudi, A. Kafash, A. Khani, and B. Kryštufek. 2022. Biogeography of rodents in Iran: species richness, elevational distribution and their environmental correlates. Mammalia 86: 309–320. https://doi.org/10.1515/mammalia-2021-0104
Abstract Rodent biogeographic studies are disproportionately scarce in Iran, however, they are an ideal system to understand drivers of biodiversity distributions in the country. The aims of the present research are to determine (i) the pattern of rodent richness across the country, (ii) quantify th…
Onditi, K. O., X. Li, W. Song, Q. Li, S. Musila, J. Mathenge, E. Kioko, and X. Jiang. 2021. The management effectiveness of protected areas in Kenya. Biodiversity and Conservation 30: 3813–3836. https://doi.org/10.1007/s10531-021-02276-7
Merely designating new and/or expanding existing protected areas (PAs) does not guarantee the protection of critical ecosystems and species. The management of PAs must be effective to sustain meaningful conservational outcomes. We inferred the management effectiveness of PAs in Kenya based on the re…
Farooq, H., J. A. R. Azevedo, A. Soares, A. Antonelli, and S. Faurby. 2020. Mapping Africa’s Biodiversity: More of the Same Is Just Not Good Enough S. Ruane [ed.],. Systematic Biology 70: 623–633. https://doi.org/10.1093/sysbio/syaa090
Species distribution data are fundamental to the understanding of biodiversity patterns and processes. Yet, such data are strongly affected by sampling biases, mostly related to site accessibility. The understanding of these biases is therefore crucial in systematics, biogeography and conservation. …
Cooper, N., A. L. Bond, J. L. Davis, R. Portela Miguez, L. Tomsett, and K. M. Helgen. 2019. Sex biases in bird and mammal natural history collections. Proceedings of the Royal Society B: Biological Sciences 286: 20192025. https://doi.org/10.1098/rspb.2019.2025
Natural history specimens are widely used across ecology, evolutionary biology and conservation. Although biological sex may influence all of these areas, it is often overlooked in large-scale studies using museum specimens. If collections are biased towards one sex, studies may not be representativ…
Carrasco, J., V. Price, V. Tulloch, and M. Mills. 2020. Selecting priority areas for the conservation of endemic trees species and their ecosystems in Madagascar considering both conservation value and vulnerability to human pressure. Biodiversity and Conservation 29: 1841–1854. https://doi.org/10.1007/s10531-020-01947-1
Madagascar is one of the most biodiverse countries in Africa, due to its level of endemism and species diversity. However, the pressure of human activities threatens the last patches of natural vegetation in the country and conservation decisions are undertaken with limited data availability. In thi…
Park, D. S., and O. H. Razafindratsima. 2018. Anthropogenic threats can have cascading homogenizing effects on the phylogenetic and functional diversity of tropical ecosystems. Ecography 42: 148–161. https://doi.org/10.1111/ecog.03825
Determining the mechanisms that underlie species distributions and assemblages is necessary to effectively preserve biodiversity. This cannot be accomplished by examining a single taxonomic group, as communities comprise a plethora of interactions across species and trophic levels. Here, we examine …