Science Enabled by Specimen Data

Mukherjee, M., and M. Mukerji. 2025. Avian atlas: Unveiling the diversity divide in major global desert realms. Ecological Indicators 171: 113094. https://doi.org/10.1016/j.ecolind.2025.113094

Given the heightened vulnerability of deserts to climate change, this study aims to provide a comprehensive analysis of avian species diversity across ten global deserts to identify distinct diversity gradients and relatedness. Identify the difference from global patterns in avian migratory proportions and the underlying drivers for assessing the vulnerability and resilience of these desert ecosystems. Crowd-sourced avian diversity data of 2374 species from GBIF.org was used as a key analytical tool to study the diversity gradient across the ten major deserts. The variance in correlation patterns between avian ecological and behavioral traits across deserts were analyzed employing data of 1930 common avian species from AVONET. The analysis included comparisons of bird diversity, migratory patterns and trophic niches between Tropic of Cancer (TCan) and Tropic of Capricorn (TCap) deserts. Significant variations in bird diversity among the deserts were found. Deserts near the TCan exhibited higher bird diversity than in TCap deserts. TCan deserts had a higher prevalence of migratory species, facilitated by a broader niche breadth among sedentary species, which reduces niche competition and allows the influx of migratory invertivores. Proportion of migratory birds is higher in TCan deserts due to wider trophic niche but is significantly lower than the global average for the same latitude range. The findings highlight the need for targeted conservation strategies to protect avian diversity in the TCan deserts and mitigate extinction risks in TCap deserts, ensuring the resilience of these critical ecosystems.

Tu, W., Y. Du, Y. E. Stuart, Y. Li, Y. Wang, Q. Wu, B. Guo, and X. Liu. 2024. Biological invasion is eroding the unique assembly of island herpetofauna worldwide. Biological Conservation 300: 110853. https://doi.org/10.1016/j.biocon.2024.110853

Island ecosystems have significant conservation value owing to their higher endemic biotas. Moreover, studies of regional communities that compare differences in species composition (species dissimilarity) among islands and the mainland suggest that community assembly on islands is different from that on the mainland. However, the uniqueness of island biotic assembly has been little studied at the global scale, nor have phylogenetic information or alien species been considered in these patterns. We evaluate taxonomic and phylogenetic change from one community to the next, focusing on differences in species composition between mainland-mainland (M-M) pairs compared to differences between mainland-island pairs (M-I) and between island-island pairs (I-I), using herpetofauna on islands and adjacent mainland areas worldwide. Our analyses detect greater taxonomic and phylogenetic dissimilarity for M-I and I-I comparisons than predicted by M-M model, indicating different island herpetofauna assembly patterns compared with mainland counterparts across the world. However, this higher M-I dissimilarity has been significantly decreased after considering alien species. Our results provide global evidence on the importance of island biodiversity conservation from the aspect of both the taxonomic and phylogenetic uniqueness of island biotic assembly.

Bartholomew, C. S., E. A. Murray, S. Bossert, J. Gardner, and C. Looney. 2024. An annotated checklist of the bees of Washington state. Journal of Hymenoptera Research 97: 1007–1121. https://doi.org/10.3897/jhr.97.129013

AbstractBees (Hymenoptera: Apoidea) are vital components of global ecosystems, yet knowledge of their distribution is limited in many regions. Washington state is located in an ecologically diverse part of North America and encompasses habitat types and plant communities known for high bee species richness. To establish a baseline for future studies on bee communities in the state, we used published and unpublished datasets to develop a preliminary annotated checklist of bees occurring in Washington state. We document, with high confidence, 565 species of bees in Washington and identify an additional 102 species likely to occur in the state. We anticipate future research survey efforts, such as the newly initiated Washington Bee Atlas, will discover several species that have the potential to occur in Washington and provide new data for 84 species which have not been recorded in more than 50 years.

Pilliod, D. S., M. I. Jeffries, R. S. Arkle, and D. H. Olson. 2024. Climate Futures for Lizards and Snakes in Western North America May Result in New Species Management Issues. Ecology and Evolution 14. https://doi.org/10.1002/ece3.70379

We assessed changes in fundamental climate‐niche space for lizard and snake species in western North America under modeled climate scenarios to inform natural resource managers of possible shifts in species distributions. We generated eight distribution models for each of 130 snake and lizard species in western North America under six time‐by‐climate scenarios. We combined the highest‐performing models per species into a single ensemble model for each scenario. Maps were generated from the ensemble models to depict climate‐niche space for each species and scenario. Patterns of species richness based on climate suitability and niche shifts were calculated from the projections at the scale of the entire study area and individual states and provinces, from Canada to Mexico. Squamate species' climate‐niche space for the recent‐time climate scenario and published known ranges were highly correlated (r = 0.81). Overall, reptile climate‐niche space was projected to move northward in the future. Sixty‐eight percent of species were projected to expand their current climate‐niche space rather than to shift, contract, or remain stable. Only 8.5% of species were projected to lose climate‐niche space in the future, and these species primarily occurred in Mexico and the southwestern U.S. We found few species were projected to lose all suitable climate‐niche space at the state or province level, although species were often predicted to occupy novel areas, such as at higher elevations. Most squamate species were projected to increase their climate‐niche space in future climate scenarios. As climate niches move northward, species are predicted to cross administrative borders, resulting in novel conservation issues for local landowners and natural resource agencies. However, information on species dispersal abilities, landscape connectivity, biophysical tolerances, and habitat suitability is needed to contextualize predictions relative to realized future niche expansions.

PEDRO, D. D., F. S. CECCARELLI, P. SAGOT, E. LÓPEZ-REYES, J. L. MULLINS, J. A. MÉRIDA-RIVAS, A. FALCON-BRINDIS, et al. 2024. Revealing the Baja California Peninsula’s Hidden Treasures: An Annotated checklist of the native bees (Hymenoptera: Apoidea: Anthophila). Zootaxa 5522: 1–391. https://doi.org/10.11646/zootaxa.5522.1.1

To date, the knowledge of bee diversity in the Baja California Peninsula has primarily relied on large, sporadic expeditions from the first half of the 20th century. To address the knowledge gaps, we conducted extensive fieldwork from 2019 to 2023, visited entomological collections in Mexico and USA, and accessed digital databases and community science platforms to compile records. As a result of our field surveys, we identified 521 morphospecies, with 350 recognized as valid species, including 96 new records for the Baja California Peninsula and 68 new findings for Mexico, including the rediscovery of Megachile seducta Mitchell, 1934, ranked as possibly extinct. Additionally, museum visits added 24 new species records for the peninsula, including 12 new to Mexico. Integrating the new and existing records results in a comprehensive checklist that documents 728 species for the peninsula, 613 for Baja California, and 300 for Baja California Sur. Notably, 62 species are endemic to the peninsula, of which 22 are only found in Baja California, and 23 in Baja California Sur. Our findings show a greater bee diversity in northern latitudes, with a sharp decrease to the central and southern peninsula, which corresponds to the geographic distribution of the records. This supports the premise that the Baja California peninsula remains an unexplored area and highlights the importance of conducting studies like the one presented here.  

Graham, K. K., P. Glaum, J. Hartert, J. Gibbs, E. Tucker, R. Isaacs, and F. S. Valdovinos. 2024. A century of wild bee sampling: historical data and neural network analysis reveal ecological traits associated with species loss. Proceedings of the Royal Society B: Biological Sciences 291. https://doi.org/10.1098/rspb.2023.2837

We analysed the wild bee community sampled from 1921 to 2018 at a nature preserve in southern Michigan, USA, to study long-term community shifts in a protected area. During an intensive survey in 1972 and 1973, Francis C. Evans detected 135 bee species. In the most recent intensive surveys conducted in 2017 and 2018, we recorded 90 species. Only 58 species were recorded in both sampling periods, indicating a significant shift in the bee community. We found that the bee community diversity, species richness and evenness were all lower in recent samples. Additionally, 64% of the more common species exhibited a more than 30% decline in relative abundance. Neural network analysis of species traits revealed that extirpation from the reserve was most likely for oligolectic ground-nesting bees and kleptoparasitic bees, whereas polylectic cavity-nesting bees were more likely to persist. Having longer phenological ranges also increased the chance of persistence in polylectic species. Further analysis suggests a climate response as bees in the contemporary sampling period had a more southerly overall distribution compared to the historic community. Results exhibit the utility of both long-term data and machine learning in disentangling complex indicators of bee population trajectories.

Lord, A., T. R. Buckley, D. M. Gleeson, and G. Giribet. 2024. Cryptic species diversity and contrasting climate profiles in Aotearoa New Zealand, egg‐laying and live‐bearing velvet worms (Onychophora, Peripatopsidae: Ooperipatellus and Peripatoides). Invertebrate Biology 143. https://doi.org/10.1111/ivb.12436

Aotearoa (New Zealand) is a biodiversity hotspot for temperate invertebrate taxa and home to high levels of endemicity. However, our knowledge of species‐level diversity and phylogeny of endemic New Zealand Onychophora (velvet worms) is at present limited. Here, we use mitochondrial cytochrome c oxidase subunit I (COI) barcoding to assess the extent of species diversity for the two velvet worm genera found in New Zealand, the ovoviviparous and endemic Peripatoides and the oviparous Ooperipatellus, found in Australia and New Zealand. Our results reveal that the estimated number of species of both genera in New Zealand is greater than currently described. We estimate there are between 13 and 67 species of Peripatoides and between 16 and 21 species of Ooperipatellus endemic to New Zealand. This is a stark increase from the two currently described New Zealand species of Ooperipatellus and previous work that has identified 10 species within Peripatoides. Our exploration of climatic variables shows that individuals of Ooperipatellus are predominantly found in wet, cool environments and Peripatoides are found across relatively drier, warmer habitats. We also generate ecological niche models to provide initial predictions of the distribution of climatically suitable habitats for each genus across New Zealand.

Nair, R. R., D. E. Gurvich, M. Pereyra, and A. N. Sérsic. 2024. Clandestine travelers, a boon for south and a bane for north? Warming-induced shifts in global invasion potential of Argentine ants. Biological Invasions 26: 3369–3392. https://doi.org/10.1007/s10530-024-03389-0

The Argentine ant is one among the 100 worst invasive animal species of the world. It has invaded six continents, and poses significant threats to the native invertebrate fauna. Prior knowledge on the suitable ecological niches of Argentine ants may help to devise better management plans. This study delineates the niches of Argentine ants using the ecological niche modeling approach by maintaining the temporal match between the distributional information and environmental data. We used an exhaustive methodological framework to understand the niche characteristics of Argentine ants in their native and invaded ranges. The model developed using combined native and invaded range distributional information provided better habitat suitability predictions in the invaded ranges. Efforts were also made to identify the suitable niches of this invasive species globally. The current global model was projected onto two future periods (2041–2070 and 2071–2100) under two different emission scenarios (SSP126 and SSP585). Our study highlights four important features related to the ecological niches of Argentine ants: (1) large habitat preference towards permanent streams in the native ranges, (2) native ecological niche is only partly conserved across invaded ranges, (3) invaded range niches are largely differentiated, and (4) global warming induces an increase in habitat suitability in the northern hemisphere. The results of this study may provide potential insights for the effective implementation of management strategies.

Li, Y., Y. Wang, and X. Liu. 2024. Half of global islands have reached critical area thresholds for undergoing rapid increases in biological invasions. Proceedings of the Royal Society B: Biological Sciences 291. https://doi.org/10.1098/rspb.2024.0844

Biological invasions are among the threats to global biodiversity and social sustainability, especially on islands. Identifying the threshold of area at which non-native species begin to increase abruptly is crucial for early prevention strategies. The small-island effect (SIE) was proposed to quantify the nonlinear relationship between native species richness and area but has not yet been applied to non-native species and thus to predict the key breakpoints at which established non-native species start to increase rapidly. Based on an extensive global dataset, including 769 species of non-native birds, mammals, amphibians and reptiles established on 4277 islands across 54 archipelagos, we detected a high prevalence of SIEs across 66.7% of archipelagos. Approximately 50% of islands have reached the threshold area and thus may be undergoing a rapid increase in biological invasions. SIEs were more likely to occur in those archipelagos with more non-native species introduction events, more established historical non-native species, lower habitat diversity and larger archipelago area range. Our findings may have important implications not only for targeted surveillance of biological invasions on global islands but also for predicting the responses of both non-native and native species to ongoing habitat fragmentation under sustained land-use modification and climate change.

Martínez-Fonseca, J. G., L. A. Trujillo, E. P. Westeen, F. A. Reid, C. Hood, M. A. Fernández-Mena, L. E. Gutiérrez-López, et al. 2024. New departmental and noteworthy records of mammals (Mammalia, Theria) from Nicaragua. Check List 20: 706–720. https://doi.org/10.15560/20.3.706

AbstractAbstract. neighboring countries. Recently, an increase in biological surveys and access to natural preserves has led to a better understanding of species distributions in Nicaragua and across Central America. Here, we provide new departmental records for three species of didelphid, 18 chiropterans (Phyllostomidae, Molossidae, Vespertilionidae), one geomyid, and one mustelid from 21 sites across the country. This work underscores the need for additional sampling across Nicaragua to fill gaps in the known distribution of many species. This information can facilitate or inform conservation actions in established and proposed preserves in Nicaragua.