Science Enabled by Specimen Data
Pan, Y., C. Fu, C. Tian, H. Zhang, X. Wang, and M. Li. 2025. Unraveling the Impact of Environmental Factors and Evolutionary History on Species Richness Patterns of the Genus Sorbus at Global Level. Plants 14: 338. https://doi.org/10.3390/plants14030338
Understanding the drivers of species richness patterns is a major goal of ecology and evolutionary biology, and the drivers vary across regions and taxa. Here, we assessed the influence of environmental factors and evolutionary history on the pattern of species richness in the genus Sorbus (110 species). We mapped the global species richness pattern of Sorbus at a spatial resolution of 200 × 200 km, using 10,652 specimen records. We used stepwise regression to assess the relationship between 23 environmental predictors and species richness and estimated the diversification rate of Sorbus based on chloroplast genome data. The effects of environmental factors were explained by adjusted R2, and evolutionary factors were inferred based on differences in diversification rates. We found that the species richness of Sorbus was highest in the Hengduan Mountains (HDM), which is probably the center of diversity. Among the selected environmental predictors, the integrated model including all environmental predictors had the largest explanatory power for species richness. The determinants of species richness show regional differences. On the global and continental scale, energy and water availability become the main driving factors. In contrast, climate seasonality is the primary factor in the HDM. The diversification rate results showed no significant differences between HDM and non-HDM, suggesting that evolutionary history may have limited impact on the pattern of Sorbus species richness. We conclude that environmental factors play an important role in shaping the global pattern of Sorbus species richness, while diversification rates have a lesser impact.
Kissell, R. E., M. T. Tercek, D. P. Thoma, and K. L. Legg. 2025. Predicted distribution of curl-leaf mountain mahogany (Cercocarpus ledifolius) in the Bighorn Canyon National Recreation Area J. A. Jones [ed.],. PLOS ONE 20: e0317146. https://doi.org/10.1371/journal.pone.0317146
Distributions of plants are expected to change in response to climate change, but the relative probability of that change is often unknown. Curl-leaf mountain mahogany (Cercocarpus ledifolius), an important browse species used by ungulates as forage and cover across the western US, is thought to be moderately to highly vulnerable to climate change this century, and a reduction in curl-leaf mountain mahogany occurrence may negatively impact ungulates reliant upon it. A combination of probability density estimation and vector analysis was used to predict curl-leaf mountain mahogany distribution across the species range relative to climate space and how that relationship would affect curl-leaf mountain mahogany at a local scale. Locally, we used the curl-leaf mountain mahogany population at the Bighorn Canyon National Recreation Area (BICA) in Montana and Wyoming for comparison. We modeled the probability of curl-leaf mountain mahogany occurrence across its distribution using water balance data to spatially and temporally assess the vulnerability of a population at a local scale. Modeled probabilities of occurrence and vector analysis indicated the species to remain in some areas within BICA but will be vulnerable in others given the predicted changes in temperature and precipitation in BICA if historical trajectories continue. This information allows managers to direct limited resources to other management actions by using the best available science to inform decisions. Other curl-leaf mountain mahogany populations currently inhabiting wetter, drier sites may follow a similar trajectory as the effects of climate change manifest. The approach used serves as a model to assess the predicted trend for species-specific plant communities of concern that may be adversely affected by climate change.
Thoen, R. D., L. B. Hendricks, G. T. Bailes, B. R. Johnson, L. Pfeifer‐Meister, P. B. Reed, B. A. Roy, and M. L. DeMarche. 2024. Spatiotemporal variation in population dynamics of a narrow endemic, Ranunculus austro‐oreganus. American Journal of Botany 112. https://doi.org/10.1002/ajb2.16446
AbstractPremiseUnderstanding how population dynamics vary in space and time is critical for understanding the basic life history and conservation needs of a species, especially for narrow endemic species whose populations are often in similar environments and therefore at increased risk of extinction under climate change. Here, we investigated the spatial and temporal variation in population dynamics of Ranunculus austro‐oreganus, a perennial buttercup endemic to fragmented prairie habitat in one county in southern Oregon.MethodsWe performed demographic surveys of three populations of R. austro‐oreganus over 4 years (2015–2018). We used size‐structured population models and life table response experiments to investigate vital rates driving spatiotemporal variation in population growth.ResultsOverall, R. austro‐oreganus had positive or stable stochastic population growth rates, though individual vital rates and overall population growth varied substantially among sites and years. All populations had their greatest growth in the same year, suggesting potential synchrony associated with climate conditions. Differences in survival contributed most to spatial variation in population growth, while differences in reproduction contributed most to temporal variation in population growth.ConclusionsPopulations of this extremely narrow endemic appear stable, with positive growth during our study window. These results suggest that populations of R. austro‐oreganus are able to persist if their habitat is not eliminated by land‐use change. Nonetheless, its narrow distribution and synchronous population dynamics suggest the need for continued monitoring, particularly with ongoing habitat loss and climate change.
MOLINO, S., G. SANTOS, R. VÁZQUEZ, R. MEDINA, and J. M. G. Y. GALÁN. 2024. Monograph of the genera Struthiopteris Scop. and Spicantopsis Nakai (Blechnaceae, Polypodiopsida). Phytotaxa 677: 1–48. https://doi.org/10.11646/phytotaxa.677.1.1
The Blechnaceae fern family, comprising approximately 250 species, exhibits a subcosmopolitan distribution but showcases notable diversity in South America and the Austropacific region. Recent taxonomic revisions expanded the generic treatment within the family, Resulting, among other things, in the resurrection of the genus Spicantopsis. This genus, segregated from Struthiopteris, now encompasses three species endemic to East Asia. Struthiopteris, on the other hand, has three species distributed in Japan, Europe, North of Africa, and western North America. Molecular evidence, coupled with morphoanatomical traits, supported this taxonomic distinction. Despite subsequent studies on palynological and morphoanatomical characteristics, a comprehensive global monograph of Struthiopteris and Spicantopsis is lacking. This paper aims to fill this gap by synthesizing available information, providing identification keys, full descriptions, taxonomic notes, and some necessary type designation for all species within both genera. The study, based on the examination of 1,649 herbarium specimens and digital materials, underscores the importance of anatomical and morphological characters in fern taxonomy. Mapping distribution data further enhances understanding of the geographic ranges of these ferns. This comprehensive synthesis contributes to the ongoing elucidation of fern diversity and taxonomy.
Bradshaw, C. D., D. L. Hemming, T. Mona, W. Thurston, M. K. Seier, D. P. Hodson, J. W. Smith, et al. 2024. Transmission pathways for the stem rust pathogen into Central and East Asia and the role of the alternate host, barberry. Environmental Research Letters 19: 114097. https://doi.org/10.1088/1748-9326/ad7ee3
Abstract After many decades of effective control of stem rust caused by the Puccinia graminis f.sp. tritici, (hereafter Pgt) the reported emergence of race TTKSK/Ug99 of Pgt in Uganda reignited concerns about epidemics worldwide because ∼90% of world wheat cultivars had no resistance to the new race. Since it was initially detected in Uganda in 1998, Ug99 variants have now been identified in thirteen countries in Africa and the Middle East. Stem rust has been a major problem in the past, and concern is increasing about the risk of return to Central and East Asia. Whilst control programs in North America and Europe relied on the use of resistant cultivars in combination with eradication of barberry (Berberis spp.), the alternate host required for the stem rust pathogen to complete its full lifecycle, the focus in East Asia was principally on the use of resistant wheat cultivars. Here, we investigate potential airborne transmission pathways for stem rust outbreaks in the Middle East to reach East Asia using an integrated modelling framework combining estimates of fungal spore deposition from an atmospheric dispersion model, environmental suitability for spore germination, and crop calendar information. We consider the role of mountain ranges in restricting transmission pathways, and we incorporate a representation of a generic barberry species into the lifecycle. We find viable transmission pathways to East Asia from the Middle East to the north via Central Asia and to the south via South Asia and that an initial infection in the Middle East could persist in East Asia for up to three years due to the presence of the alternate host. Our results indicate the need for further assessment of barberry species distributions in East Asia and appropriate methods for targeted surveillance and mitigation strategies should stem rust incidence increase in the Middle East region.
Noel, A., D. R. Schlaepfer, B. J. Butterfield, M. C. Swan, J. Norris, K. Hartwig, M. C. Duniway, and J. B. Bradford. 2024. Most Pinyon–Juniper Woodland Species Distributions Are Projected to Shrink Rather Than Shift Under Climate Change. Rangeland Ecology & Management. https://doi.org/10.1016/j.rama.2024.09.002
Pinyon–juniper (PJ) woodlands are among the most widespread ecosystems in rangelands of western North America, supporting diverse wildlife habitat, recreation, grazing, and cultural/spiritual enrichment. Anticipating future distribution shifts under changing climate will be critical to climate adaptation and conservation efforts in these ecosystems. Here, we evaluate drivers of PJ tree species’ distributions and project changes in response to future climate change. We developed species distribution models with dryland-focused predictors to project environmental suitability changes across the entirety of three pinyon and six juniper species ranges. We identify areas of robust suitability change by combining suitability projections from multiple emissions scenarios and time periods. PJ species’ suitabilities respond to many temperature and moisture covariates expected to change in the future. Projected responses among PJ species are highly variable, ranging from modest declines with concurrent gains for overall little net change to wide-ranging declines with no gains for overall range contractions. Environmental suitability is projected to decline broadly across the arid United States Southwest and remain relatively stable across the northern Great Basin and Colorado Plateau. Our results suggest unique responses of PJ species to future climate change. We found that species were projected to experience more losses than gains in suitability, for overall range shrinks rather than shifts. Land managers have the capacity to increase woodland resilience to drought, and our results can inform rangeland-wide management planning and conservation efforts in PJ woodlands.
Winston, R. L., M. Schwarzländer, H. L. Hinz, J. Rushton, and P. D. Pratt. 2024. Prioritizing weeds for biological control development in the western USA: Results from the adaptation of the biological control target selection system. Biological Control 198: 105634. https://doi.org/10.1016/j.biocontrol.2024.105634
Nonnative invasive plants (weeds) negatively impact native ecosystems, and their effects are likely to increase with continuing global trade. Biological weed control has been employed as a cost-effective and sustainable management option for weeds in the USA since 1902. Biological control programs require careful prioritization of target weeds to ensure the most appropriate targets are selected to obtain the greatest beneficial outcomes with available resources. The Biological Control Target Selection (BCTS) system was developed by researchers in South Africa as an objective, transparent approach to prioritizing new weed biological control targets. The BCTS system was recently modified and applied to 295 state-regulated weeds in the western USA for which no biological control agents have yet been released. This paper presents the results of that application, identifying the most suitable candidates for new biological control programs as well as problematic weeds for which the likelihood of successful biological control is low.Top-ranked species in the western USA are biennial or perennial weeds that occur in stable habitats, are established in more than one state, have traits deemed difficult to control with conventional methods, have large negative impacts and no conflicts of interest outside of the horticultural industry, and have substantial information available on potential biocontrol agents. Fifteen of the 20 top-ranked species are already targets of ongoing biological control programs in the USA. When species with current programs are excluded from the analysis, the next 20 top-ranked species largely differ by having less information available on potential biological control agents and having native or economically important congeners in the USA. Results from this framework provide valuable insights to the prioritization of current and future biocontrol research programs in the western USA.
Gori, B., A. Vecchia, M. Amoruso, G. Pezzi, G. Brundu, A. Stinca, and C. Lambertini. 2024. Invasion trends of aquatic Ludwigia hexapetala and L. peploides subsp. montevidensis (Onagraceae) in Italy based on herbarium records and global datasets. Management of Biological Invasions 15: 313–336. https://doi.org/10.3391/mbi.2024.15.3.02
Identifying areas susceptible to invasion by an alien species is a strategy of prevention. We used national herbaria and global databases to assess the invasion trends of the two aquatic invasive species Ludwigia hexapetala and Ludwigia peploides subsp. montevidensis in Italy. We defined the invasion status with invasion curves and predicted potentially suitable areas with Species Distribution Models based on WorldClim variables and the human footprint index. Low seasonal variation in temperature and precipitation, temperature ≥ 20 °C in the driest period of the year and low precipitation in the coldest period are the bioclimatic factors that most account for the potential distribution of the two species. The human footprint has a lower relative importance than bioclimatic variables. All Italian peninsula appears as a suitable bioclimatic environment for the invasion of the two Ludwigia species, with over 90% of areas with high suitability lying below 600 m altitude. Only mountain regions and the islands appear less suitable. The agricultural land at the foothill of the Appennine in the Mediterranean region is the most vulnerable to the invasion. Considering the trend of the invasion curves, which have been sharply rising for the latest decades, there are reasons to expect that the alien Ludwigia species will continue their expansion, if no timely and effective actions are taken. Informative campaigns, accurate monitoring and prompt management are fundamental preventive tools in areas predicted as vulnerable to invasion by this study.
Prevéy, J. S., I. S. Pearse, D. M. Blumenthal, A. J. Howell, J. A. Kray, S. C. Reed, M. B. Stephenson, and C. S. Jarnevich. 2024. Phenology forecasting models for detection and management of invasive annual grasses. Ecosphere 15. https://doi.org/10.1002/ecs2.70023
Non‐native annual grasses can dramatically alter fire frequency and reduce forage quality and biodiversity in the ecosystems they invade. Effective management techniques are needed to reduce these undesirable invasive species and maintain ecosystem services. Well‐timed management strategies, such as grazing, that are applied when invasive grasses are active prior to native plants can control invasive species spread and reduce their impact; however, anticipating the timing of key phenological stages that are susceptible to management over vast landscapes is difficult, as the phenology of these species can vary greatly over time and space. To address this challenge, we created range‐wide phenology forecasts for two problematic invasive annual grasses: cheatgrass (Bromus tectorum), and red brome (Bromus rubens). We tested a suite of 18 mechanistic phenology models using observations from monitoring experiments, volunteer science, herbarium records, timelapse camera imagery, and downscaled gridded climate data to identify the models that best predicted the dates of flowering and senescence of the two invasive grass species. We found that the timing of flowering and senescence of cheatgrass and red brome were best predicted by photothermal time models that had been adjusted for topography using gridded continuous heat‐insolation load index values. Phenology forecasts based on these models can help managers make decisions about when to schedule management actions such as grazing to reduce undesirable invasive grasses and promote forage production, quality, and biodiversity in grasslands; to predict the timing of greatest fire risk after annual grasses dry out; and to select remote sensing imagery to accurately map invasive grasses across topographic and latitudinal gradients. These phenology models also have the potential to be operationalized for within‐season or within‐year decision support.
Saunders, T. C., I. Larridon, W. J. Baker, R. L. Barrett, F. Forest, E. Françoso, O. Maurin, et al. 2024. Tangled webs and spider‐flowers: Phylogenomics, biogeography, and seed morphology inform the evolutionary history of Cleomaceae. American Journal of Botany 111. https://doi.org/10.1002/ajb2.16399
Premise Cleomaceae is an important model clade for studies of evolutionary processes including genome evolution, floral form diversification, and photosynthetic pathway evolution. Diversification and divergence patterns in Cleomaceae remain tangled as research has been restricted by its worldwide distribution, limited genetic sampling and species coverage, and a lack of definitive fossil calibration points.MethodsWe used target sequence capture and the Angiosperms353 probe set to perform a phylogenetic study of Cleomaceae. We estimated divergence times and biogeographic analyses to explore the origin and diversification of the family. Seed morphology across extant taxa was documented with multifocal image‐stacking techniques and morphological characters were extracted, analyzed, and compared to fossil records.ResultsWe recovered a well‐supported and resolved phylogenetic tree of Cleomaceae generic relationships that includes 236 (~86%) species. We identified 11 principal clades and confidently placed Cleomella as sister to the rest of the family. Our analyses suggested that Cleomaceae and Brassicaceae diverged ~56 mya, and Cleomaceae began to diversify ~53 mya in the Palearctic and Africa. Multiple transatlantic disjunct distributions were identified. Seeds were imaged from 218 (~80%) species in the family and compared to all known fossil species.ConclusionsOur results represent the most comprehensive phylogenetic study of Cleomaceae to date. We identified transatlantic disjunctions and proposed explanations for these patterns, most likely either long‐distance dispersals or contractions in latitudinal distributions caused by climate change over geological timescales. We found that seed morphology varied considerably but mostly mirrored generic relationships.