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Science Enabled by Specimen Data

López-Reyes, K., C. Yáñez-Arenas, and F. Villalobos. 2024. Exploring the causes underlying the latitudinal variation in range sizes: Evidence for Rapoport’s rule in spiny lizards (genus Sceloporus) B. K. Acharya [ed.],. PLOS ONE 19: e0306832. https://doi.org/10.1371/journal.pone.0306832

Species’ range size is a fundamental unit of analysis in biodiversity research, given its association with extinction risk and species richness. One of its most notable patterns is its positive relationship with latitude, which has been considered an ecogeographical rule called Rapoport’s rule. Despite this rule being confirmed for various taxonomic groups, its validity has been widely discussed and several taxa still lack a formal assessment. Different hypotheses have been proposed to explain their potential mechanisms, with those related to temperature and elevational being the most supported thus far. In this study, we employed two level of analyses (cross-species and assemblage) to investigate the validity of Rapoport’s rule in spiny lizards (genus Sceloporus). Additionally, we evaluated four environmental-related hypotheses (minimum temperature, temperature variability, temperature stability since the last glacial maximum, and elevation) posed to explain such pattern, contrasting our results to those patterns expected under a null model of range position. Our results provided support for Rapoport’s rule at both levels of analyses, contrasting with null expectations. Consistently, minimum temperature and elevation were the most relevant variables explaining the spatial variation in range size. At the cross-species level, our null simulations revealed that both variables deviated significantly from random expectations. Conversely, at the assemblage level, none of the variables were statistically different from the expected relationships. We discussed the implication of our findings in relation to the ecology and evolution of spiny lizards.

Forti, L. R., J. L. C. da Silva, E. A. Ferreira, and J. K. Szabo. 2024. The implications of estimating rarity in Brazilian reptiles from GBIF data based on contributions from citizen science versus research institutions. Integrative Conservation 3: 112–126. https://doi.org/10.1002/inc3.53

Understanding the distribution of rare species is important for conservation prioritisation. Traditionally, museums and other research institutions have served as depositories for specimens and biodiversity information. However, estimating abundance from these sources is challenging due to spatiotemporally biased collection methods. For instance, large‐bodied reptiles that are found near research institutions or in popular, easily accessible sites tend to be overrepresented in collections compared to smaller species found in remote areas. Recently, a substantial number of observations have been amassed through citizen (or community) science initiatives, which are invaluable for monitoring purposes. Given the unstructured nature of this sampling, these datasets are often affected by biases, such as taxonomic, spatial and temporal preferences. Therefore, analysing data from these two sources can lead to different abundance estimates. This study compiled data on Brazilian reptile species from the Global Information Biodiversity Facility (GBIF). It employed a community‐ecology approach to analyse data from research institutions and citizen science initiatives, separately and collectively, to assess taxonomic and spatial species coverage and predict species rarity. Using a 1‐degree hexagonal grid, we analysed the spatial distribution of reptile communities and calculated rarity indices for 754 reptile species. Our findings reveal that 87 species were exclusively recorded in the citizen science subset, while 212 were recorded only by research institutions. The number of observations per species in the citizen science data followed a Gambin distribution, which aligns with the expected pattern of abundance in natural communities, unlike the data from research institutions. This suggests that citizen science data may be a more accurate source for estimating species abundance and rarity. The discrepancies in rarity classifications between the datasets were likely due to differences in sample size and potentially other sampling parameters. Nevertheless, combining data collected by both research institutions and citizen science initiatives can help to fill knowledge gaps in reptile species occurrence, thus enhancing the foundation for conservation efforts on a national scale.

Baltensperger, A. P., H. C. Lanier, and L. E. Olson. 2024. Extralimital terrestrials: A reassessment of range limits in Alaska’s land mammals J. R. Michaux [ed.],. PLOS ONE 19: e0294376. https://doi.org/10.1371/journal.pone.0294376

Understanding and mitigating the effects of anthropogenic climate change on species distributions requires the ability to track range shifts over time. This is particularly true for species occupying high-latitude regions, which are experiencing more extreme climate change than the rest of the world. In North America, the geographic ranges of many mammals reach their northernmost extent in Alaska, positioning this region at the leading edge of climate-induced distribution change. Over a decade has elapsed since the publication of the last spatial assessments of terrestrial mammals in the state. We compared public occurrence records against commonly referenced range maps to evaluate potential extralimital records and develop repeatable baseline range maps. We compared occurrence records from the Global Biodiversity Information Facility for 61 terrestrial mammal species native to mainland Alaska against a variety of range estimates (International Union for Conservation of Nature, Alaska Gap Analysis Project, and the published literature). We mapped extralimital records and calculated proportions of occurrences encompassed by range extents, measured mean direction and distance to prior range margins, evaluated predictive accuracy of published species models, and highlighted observations on federal lands in Alaska. Range comparisons identified 6,848 extralimital records for 39 of 61 (63.9%) terrestrial mainland Alaskan species. On average, 95.5% of Alaska Gap Analysis Project occurrence records and ranges were deemed accurate (i.e., > 90.0% correct) for 31 of 37 species, but overestimated extents for 13 species. The International Union for Conservation of Nature range maps encompassed 68.1% of occurrence records and were > 90% accurate for 17 of 39 species. Extralimital records represent either improved sampling and digitization or actual geographic range expansions. Here we provide new data-driven range maps, update standards for the archiving of museum-quality locational records and offer recommendations for mapping range changes for monitoring and conservation.

Cheeseman, A. E., D. S. Jachowski, and R. Kays. 2024. From past habitats to present threats: tracing North American weasel distributions through a century of climate and land use change. Landscape Ecology 39. https://doi.org/10.1007/s10980-024-01902-3

Context Shifts in climate and land use have dramatically reshaped ecosystems, impacting the distribution and status of wildlife populations. For many species, data gaps limit inference regarding population trends and links to environmental change. This deficiency hinders our ability to enact meaningful conservation measures to protect at risk species. Objectives We investigated historical drivers of environmental niche change for three North American weasel species (American ermine, least weasel, and long-tailed weasel) to understand their response to environmental change. Methods Using species occurrence records and corresponding environmental data, we developed species-specific environmental niche models for the contiguous United States (1938–2021). We generated annual hindcasted predictions of the species’ environmental niche, assessing changes in distribution, area, and fragmentation in response to environmental change. Results We identified a 54% decline in suitable habitat alongside high levels of fragmentation for least weasels and region-specific trends for American ermine and long-tailed weasels; declines in the West and increased suitability in the East. Climate and land use were important predictors of the environmental niche for all species. Changes in habitat amount and distribution reflected widespread land use changes over the past century while declines in southern and low-elevation areas are consistent with impacts from climatic change. Conclusions Our models uncovered land use and climatic change as potential historic drivers of population change for North American weasels and provide a basis for management recommendations and targeted survey efforts. We identified potentially at-risk populations and a need for landscape-level planning to support weasel populations amid ongoing environmental changes.

Owen, E., M. Zuliani, M. Goldgisser, and C. Lortie. 2024. The importance of native shrubs on the distribution and diversity of reptiles and amphibians in the central drylands of Southwestern USA. Biodiversity and Conservation 33: 2131–2151. https://doi.org/10.1007/s10531-024-02851-8

Conservation and management of drylands is a global challenge. Key attributes of these ecosystems, such as dominant vegetation including shrubs, can provide a crucial mechanism to inform conservation strategies. The shrub species Ephedra californica and Larrea tridentata are common native shrub species within the deserts of California and frequently benefit other plant and animal species. Here, we tested the hypothesis that shrubs support reptile and amphibian communities through relative increases in available habitat, estimated through increasing shrub densities at the site level. Reported occurrence data from the Global Biodiversity Information Facility (GBIF) and high-resolution satellite images were used to test for local-to-regional patterns in reptile and amphibian distribution and diversity by shrub densities at sites. At 43 distinct sites, the relationship between shrub density and reported reptile and amphibian communities was also tested. A total of 71 reptile and amphibian species were reported regionally. Increases in shrub density across sites positively influenced the relative abundance and richness of reptiles and amphibians observed. Moreover, increasing shrub density also had a positive influence on species evenness. Aridity differences between sites did not significantly influence the relationship between shrub density and reptiles and amphibians suggesting that the relationship was robust. This study highlights the importance of foundational shrub species in supporting reptile and amphibian communities in arid and semi-arid regions. Large-scale patterns of biodiversity in deserts can be supported by positive plant-animal interactions including small islands of fertility and resources for animals in the context of a warming climate.

Thonis, A., A. Stansfield, and H. R. Akçakaya. 2024. Unravelling the role of tropical cyclones in shaping present species distributions. Global Change Biology 30. https://doi.org/10.1111/gcb.17232

Driven by climate change, tropical cyclones (TCs) are predicted to change in intensity and frequency through time. Given these forecasted changes, developing an understanding of how TCs impact insular wildlife is of heightened importance. Previous work has shown that extreme weather events may shape species distributions more strongly than climatic averages; however, given the coarse spatial and temporal scales at which TC data are often reported, the influence of TCs on species distributions has yet to be explored. Using TC data from the National Hurricane Center, we developed spatially and temporally explicit species distribution models (SDMs) to examine the role of TCs in shaping present‐day distributions of Puerto Rico's 10 Anolis lizard species. We created six predictor variables to represent the intensity and frequency of TCs. For each occurrence of a species, we calculated these variables for TCs that came within 500 km of the center of Puerto Rico and occurred within the 1‐year window prior to when that occurrence was recorded. We also included predictor variables related to landcover, climate, topography, canopy cover and geology. We used random forests to assess model performance and variable importance in models with and without TC variables. We found that the inclusion of TC variables improved model performance for the majority of Puerto Rico's 10 anole species. The magnitude of the improvement varied by species, with generalist species that occur throughout the island experiencing the greatest improvements in model performance. Range‐restricted species experienced small, almost negligible, improvements but also had more predictive models both with and without the inclusion of TC variables compared to generalist species. Our findings suggest that incorporating data on TCs into SDMs may be important for modeling insular species that are prone to experiencing these types of extreme weather events.

DuBose, T. P., V. Catalan, C. E. Moore, V. R. Farallo, A. L. Benson, J. L. Dade, W. A. Hopkins, and M. C. Mims. 2024. Thermal Traits of Anurans Database for the Southeastern United States (TRAD): A Database of Thermal Trait Values for 40 Anuran Species. Ichthyology & Herpetology 112. https://doi.org/10.1643/h2022102

Thermal traits, or how an animal responds to changing temperatures, impacts species persistence and thus biodiversity. Trait databases, as repositories of consolidated, measured organismal attributes, allow researchers to link study species with specific trait values, enabling comparisons within and among species. Trait databases also help lay the groundwork to build mechanistic linkages between organisms and the environment. However, missing or hidden physiological trait data preclude building mechanistic estimates of climate change vulnerability for many species. Thus, physiologically focused trait databases present an opportunity to consolidate data and enable species-specific or multispecies, mechanistic evaluations of climate change vulnerability. Here, we present TRAD: thermal traits of anurans database for the southeastern United States, a database of thermal trait values related to physiological thermoregulation (critical thermal minima and maxima, preferred temperature), behavioral thermoregulation (activity period, retreat emergence temperature, basking temperature, minimum and maximum foraging temperatures), and body mass for 37 anuran species found within the southeastern United States. In total, TRAD contains 858 reported trait values for 37 of 40 species found in the region from 267 peer-reviewed papers, dissertations, or theses and is easily linked with trait data available in ATraiU, an ecological trait database for anurans in the United States. TRAD contains trait values for multiple life stages and a summarization of interspecific adult trait values. Availability of trait data varied widely among traits and species. Estimates of mass were the most common trait values reported, with values available for 32 species. Behavioral trait values comprised 23% of our database, with activity period available for 34 species. We found the most trait values for Cope's Gray Treefrog (Dryophytes chrysoscelis), with at least one trait value for eight traits in the database. Conversely, species in the genus Pseudacris generally had the fewest trait values available. Species with the largest geographic range sizes also had the greatest coverage of data across traits (rho 5 0.75, P , 0.001). TRAD can aid studies of anuran response to changing temperatures, physiological niche space and limitations, and potential drivers of anuran geographic range limits, influencing our understanding of other ecological and evolutionary patterns and processes and enabling multispecies comparisons of potential risk and resilience in the face of climate change.

Scarpetta, S. G. 2024. A Palaeogene stem crotaphytid ( Aciprion formosum ) and the phylogenetic affinities of early fossil pleurodontan iguanians. Royal Society Open Science 11. https://doi.org/10.1098/rsos.221139

Pleurodonta is an ancient, diverse clade of iguanian lizard distributed primarily in the Western Hemisphere. Although the clade is a frequent subject of systematic research, phylogenetic resolution among the major pleurodontan clades is elusive. That uncertainty has complicated the interpretations of many fossil pleurodontans. I describe a fossil skull of a pleurodontan lizard from the Palaeogene of Wyoming that was previously allocated to the puzzling taxon Aciprion formosum , and provide an updated morphological matrix for iguanian lizards. Phylogenetic analyses using Bayesian inference demonstrate that the fossil skull is the oldest and first definitive stem member of Crotaphytidae (collared and leopard lizards), establishing the presence of that clade in North America during the Palaeogene. I also discuss new or revised hypotheses for the relationships of several early pleurodontans. In particular, I examine potential evidence for crown-Pleurodonta in the Cretaceous of Mongolia ( Polrussia ), stem Pleurodonta in the Cretaceous of North America ( Magnuviator ) and a stem anole in the Eocene of North America ( Afairiguana ). I suggest that the placement of the fossil crotaphytid is stable to the uncertain phylogeny of Pleurodonta, but recognize the dynamic nature of fossil diagnosis and the potential for updated systematic hypotheses for the other fossils analysed here.

Hebets, E. A., M. Oviedo-Diego, F. Cargnelutti, F. Bollatti, L. Calbacho-Rosa, C. I. Mattoni, P. Olivero, et al. 2023. A scientist’s guide to Solifugae: how solifuges could advance research in ecology, evolution, and behaviour. Zoological Journal of the Linnean Society. https://doi.org/10.1093/zoolinnean/zlad174

Despite having >1200 described species and despite their nearly worldwide distribution and prevalence in many xeric ecosystems, relative to many other arachnid groups, we know little about the natural history and behaviour of animals in the order Solifugae (camel spiders, sun spiders, sun scorpions, etc.). Here, we review the current solifuge literature through the lens of conceptual research areas in ecology, evolution, and behaviour and propose ways in which solifuges can contribute to research in specific subfields, as follows: (i) ecology: community and trophic dynamics; connecting food webs; habitat specialization; and biodiversity and conservation; (ii) evolution: speciation and diversification; activity cycles and associated traits; adaptations for speed; and living in extreme environments; and (iii) behaviour and sensory systems: sleep, quiescence, and diapause; sensory systems and sensory ecology; learning and cognition; and mating systems, sexual selection, and sexual conflict. This resource can provide a starting point for identifying research programmes that will simultaneously contribute basic natural history information about this under-studied group and provide a broader understanding of fundamental concepts and theories across the life sciences. We hope that scientists will take this review as a challenge to develop creative ways of leveraging the unique features of solifuges to advance scientific knowledge and understanding.

Munna, A. H., N. A. Amuri, P. Hieronimo, and D. A. Woiso. 2023. Modelling ecological niches of Sclerocarya birrea subspecies in Tanzania under the current and future climates. Silva Fennica 57. https://doi.org/10.14214/sf.23009

The information on ecological niches of the Marula tree, Sclerocarya birrea (A. Rich.) Horchst. subspecies are needed for sustainable management of this tree, considering its nutritional, economic, and ecological benefits. However, despite Tanzania being regarded as a global genetic center of diversity of S. birrea, information on the subspecies ecological niches is lacking. We aimed to model ecological niches of S. birrea subspecies in Tanzania under the current and future climates. Ecological niches under the current climate were modelled by using ecological niche models in MaxEnt using climatic, edaphic, and topographical variables, and subspecies occurrence data. The Hadley Climate Center and National Center for Atmospheric Research's Earth System Models were used to predict ecological niches under the medium and high greenhouse gases emission scenarios for the years 2050 and 2080. Area under the curves (AUCs) were used to assess the accuracy of the models. The results show that the models were robust, with AUCs of 0.85–0.95. Annual and seasonal precipitation, elevation, and soil cation exchange capacity are the key environmental factors that define the ecological niches of the S. birrea subspecies. Ecological niches of subsp. caffra, multifoliata, and birrea are currently found in 30, 22, and 21 regions, and occupy 184 814 km2, 139 918 km2, and 28 446 km2 of Tanzania's land area respectively, which will contract by 0.4–44% due to climate change. Currently, 31–51% of ecological niches are under Tanzania’s protected areas network. The findings are important in guiding the development of conservation and domestication strategies for the S. birrea subspecies in Tanzania.