Science Enabled by Specimen Data

Li, L., Y. Lu, X. Chen, Y. Tong, X. Zhou, N. Liu, D. Král, and M. Bai. 2025. The inverse latitudinal diversity gradient and drivers in keratinophagous trogid beetles (Coleoptera: Trogidae). Insect Science. https://doi.org/10.1111/1744-7917.70035

(no abstract available)

Pan, Y., C. Fu, C. Tian, H. Zhang, X. Wang, and M. Li. 2025. Unraveling the Impact of Environmental Factors and Evolutionary History on Species Richness Patterns of the Genus Sorbus at Global Level. Plants 14: 338. https://doi.org/10.3390/plants14030338

Understanding the drivers of species richness patterns is a major goal of ecology and evolutionary biology, and the drivers vary across regions and taxa. Here, we assessed the influence of environmental factors and evolutionary history on the pattern of species richness in the genus Sorbus (110 species). We mapped the global species richness pattern of Sorbus at a spatial resolution of 200 × 200 km, using 10,652 specimen records. We used stepwise regression to assess the relationship between 23 environmental predictors and species richness and estimated the diversification rate of Sorbus based on chloroplast genome data. The effects of environmental factors were explained by adjusted R2, and evolutionary factors were inferred based on differences in diversification rates. We found that the species richness of Sorbus was highest in the Hengduan Mountains (HDM), which is probably the center of diversity. Among the selected environmental predictors, the integrated model including all environmental predictors had the largest explanatory power for species richness. The determinants of species richness show regional differences. On the global and continental scale, energy and water availability become the main driving factors. In contrast, climate seasonality is the primary factor in the HDM. The diversification rate results showed no significant differences between HDM and non-HDM, suggesting that evolutionary history may have limited impact on the pattern of Sorbus species richness. We conclude that environmental factors play an important role in shaping the global pattern of Sorbus species richness, while diversification rates have a lesser impact.

Liu, H., X. Feng, Y. Zhao, G. Lv, C. Zhang, Aruhan, T.-A. Damba, et al. 2024. Pharmacophylogenetic relationships of genus Dracocephalum and its related genera based on multifaceted analysis. Frontiers in Pharmacology 15. https://doi.org/10.3389/fphar.2024.1449426

The Lamiaceae genus Dracocephalum, with over 30 species, is believed to have considerable medicinal properties and is widely used in Eurasian ethnomedicine. Numerous studies have researched on the geographical distribution, metabolite identification, and bioactivity of Dracocephalum species, especially amidst debates concerning the taxonomy of its closely related genera Hyssopus and Lallemantia. These discussions present an opportunity for pharmacophylogenetic studies of these medicinal plants. In this review, we collated extensive literature and data to present a multifaceted view of the geographical distribution, phylogenetics, phytometabolites and chemodiversity, ethnopharmacological uses, and pharmacological activities of Dracocephalum, Hyssopus, and Lallemantia. We found that these genera were concentrated in Europe, with species adapted to various climatic zones. These genera shared close phylogenetic relationships, with Dracocephalum and Hyssopus displaying intertwined patterns in the phylogenetic tree. Our review assessed more than 900 metabolites from these three genera, with terpenoids and flavonoids being the most abundant. Researchers have recently identified novel metabolites within Dracocephalum, expanding our understanding of its chemical constituents. Ethnopharmacologically, these genera have been traditionally used for treating respiratory, liver and gall bladder diseases. Extracts and metabolites from these genera exhibit a range of pharmacological activities such as hepatoprotective, anti-inflammation, antimicrobial action, anti-hyperlipidaemia, and anti-tumour properties. By integrating phylogenetic analyses with network pharmacology, we explored the intrinsic links between metabolite profiles, traditional efficacy, and modern pharmacology of Dracocephalum and its related genera. This study contributes to the discovery of potential medicinal value from closely related species of Dracocephalum and aids in the development and sustainable use of medicinal plant resources.

Repetto, E., E. Guariento, A. Marsy, and A. Hilpold. 2024. Leptophyes punctatissima (Orthoptera: Tettigoniidae) – Observation of an established population in South Tyrol and report of additional findings. Zenodo. https://doi.org/10.5281/zenodo.14035931

With the present faunistic note we report the first observation of an established population of Leptophyes punctatissima (Bosc, 1792) in South Tyrol from Neustift / Novacella, far off from urban areas. The species was recorded over two seasons at the same site with several individuals. Additionally, one new record by the authors is reported for the urban area of Bruneck / Brunico and two findings from citizen science platforms are reported and discussed.

Tu, W., Y. Du, Y. E. Stuart, Y. Li, Y. Wang, Q. Wu, B. Guo, and X. Liu. 2024. Biological invasion is eroding the unique assembly of island herpetofauna worldwide. Biological Conservation 300: 110853. https://doi.org/10.1016/j.biocon.2024.110853

Island ecosystems have significant conservation value owing to their higher endemic biotas. Moreover, studies of regional communities that compare differences in species composition (species dissimilarity) among islands and the mainland suggest that community assembly on islands is different from that on the mainland. However, the uniqueness of island biotic assembly has been little studied at the global scale, nor have phylogenetic information or alien species been considered in these patterns. We evaluate taxonomic and phylogenetic change from one community to the next, focusing on differences in species composition between mainland-mainland (M-M) pairs compared to differences between mainland-island pairs (M-I) and between island-island pairs (I-I), using herpetofauna on islands and adjacent mainland areas worldwide. Our analyses detect greater taxonomic and phylogenetic dissimilarity for M-I and I-I comparisons than predicted by M-M model, indicating different island herpetofauna assembly patterns compared with mainland counterparts across the world. However, this higher M-I dissimilarity has been significantly decreased after considering alien species. Our results provide global evidence on the importance of island biodiversity conservation from the aspect of both the taxonomic and phylogenetic uniqueness of island biotic assembly.

Bradshaw, C. D., D. L. Hemming, T. Mona, W. Thurston, M. K. Seier, D. P. Hodson, J. W. Smith, et al. 2024. Transmission pathways for the stem rust pathogen into Central and East Asia and the role of the alternate host, barberry. Environmental Research Letters 19: 114097. https://doi.org/10.1088/1748-9326/ad7ee3

Abstract After many decades of effective control of stem rust caused by the Puccinia graminis f.sp. tritici, (hereafter Pgt) the reported emergence of race TTKSK/Ug99 of Pgt in Uganda reignited concerns about epidemics worldwide because ∼90% of world wheat cultivars had no resistance to the new race. Since it was initially detected in Uganda in 1998, Ug99 variants have now been identified in thirteen countries in Africa and the Middle East. Stem rust has been a major problem in the past, and concern is increasing about the risk of return to Central and East Asia. Whilst control programs in North America and Europe relied on the use of resistant cultivars in combination with eradication of barberry (Berberis spp.), the alternate host required for the stem rust pathogen to complete its full lifecycle, the focus in East Asia was principally on the use of resistant wheat cultivars. Here, we investigate potential airborne transmission pathways for stem rust outbreaks in the Middle East to reach East Asia using an integrated modelling framework combining estimates of fungal spore deposition from an atmospheric dispersion model, environmental suitability for spore germination, and crop calendar information. We consider the role of mountain ranges in restricting transmission pathways, and we incorporate a representation of a generic barberry species into the lifecycle. We find viable transmission pathways to East Asia from the Middle East to the north via Central Asia and to the south via South Asia and that an initial infection in the Middle East could persist in East Asia for up to three years due to the presence of the alternate host. Our results indicate the need for further assessment of barberry species distributions in East Asia and appropriate methods for targeted surveillance and mitigation strategies should stem rust incidence increase in the Middle East region.

Xu, L., Z. Song, T. Li, Z. Jin, B. Zhang, S. Du, S. Liao, et al. 2024. New insights into the phylogeny and infrageneric taxonomy of Saussurea based on hybrid capture phylogenomics (Hyb-Seq). Plant Diversity. https://doi.org/10.1016/j.pld.2024.10.003

Saussurea is one of the largest and most rapidly evolving genera within the Asteraceae, comprising approximately 520 species from the Northern Hemisphere. A comprehensive infrageneric classification, supported by robust phylogenetic trees and corroborated by morphological and other data, has not yet been published. For the first time, we recovered a well-resolved nuclear phylogeny of Saussurea consisting of four main clades, which was also supported by morphological data. Our analyses show that ancient hybridization is the most likely source of deep cytoplasmic-nuclear conflict in Saussurea, and a phylogeny based on nuclear data is more suitable than one based on chloroplast data for exploring the infrageneric classification of Saussurea. Based on the nuclear phylogeny obtained and morphological characters, we proposed a revised infrageneric taxonomy of Saussurea, which includes four subgenera and 13 sections. Specifically, 1) S. sect. Cincta, S. sect. Gymnocline, S. sect. Lagurostemon, and S. sect. Strictae were moved from S. subg. Saussurea to S. subg. Amphilaena, 2) S. sect. Pseudoeriocoryne was moved from S. subg. Eriocoryne to S. subg. Amphilaena, and 3) S. sect. Laguranthera was moved from S. subg. Saussurea to S. subg. Theodorea.

Marchuk, E. A., A. K. Kvitchenko, L. A. Kameneva, A. A. Yuferova, and D. E. Kislov. 2024. East Asian forest-steppe outpost in the Khanka Lowland (Russia) and its conservation. Journal of Plant Research 137: 997–1018. https://doi.org/10.1007/s10265-024-01570-z

The Khanka Lowland forest-steppe is the most eastern outpost of the Eurasian steppe biome. It includes unique grassland plant communities with rare steppe species. These coenosis have changed under the influence of anthropogenic activity, especially during the last 100 years and included both typical steppe species and nemoral mesophytic species. To distinguish these ecological groups of plants the random forest method with three datasets of environmental variables was applied. Specifically, a model of classification with the most important bioindices to predict a mesophytic ecological group of plants with a sensitivity greater than 80% was constructed. The data demonstrated the presence of steppe species that arrived at different times in the Primorye Territory. Most of these species are associated with the Mongolian-Daurian relict steppe complex and habit in the Khanka Lowland. Other species occur only in mountains in Primorye Territory and do not persist in the Khanka Lowland. These findings emphasize the presence of relict steppe communities with a complex of true steppe species in the Khanka Lowland. Steppe communities exhibit features of anthropogenic influence definitely through the long land use period but are not anthropogenic in origin. The most steppe species are located at the eastern border of distribution in the Khanka Lowlands and are valuable in terms of conservation and sources of information about steppe species origin and the emergence of the steppe biome as a whole.

Worth, J. R. P., S. Kikuchi, S. Kanetani, D. Takahashi, M. Aizawa, E. A. Marchuk, H. J. Choi, et al. 2024. Chloroplast genome‐based genetic resources via genome skimming for the subalpine forests of Japan and adjacent regions. Ecology and Evolution 14. https://doi.org/10.1002/ece3.11584

The Japanese subalpine zone is dominated by an ecologically important forest biome, subalpine coniferous forest, constituting a distinct assemblage of cold‐tolerant angiosperm and conifer species. While being relatively intact compared to other forest biomes in Japan, subalpine coniferous forests are under significant threat from deer browsing, global warming and small population size effects. However, there is a severe lack of genetic resources available for this biome's major constituent plant species. This study aimed to develop chloroplast genome‐based genetic resources for 12 widespread subalpine tree and shrub species (7 angiosperms and 5 conifers) via genome skimming of whole‐genomic DNA using short reads (100–150 bp in length). For 10 species, whole chloroplast genomes were assembled via de novo‐based methods from 4 to 10 individuals per species sampled from across their ranges in Japan and, for non‐Japanese endemic species, elsewhere in northeast Asia. A total of 566 single nucleotide polymorphisms for Japanese samples and 768 for all samples (varying from 2 to 202 per species) were identified which were distributed in geographically restricted lineages in most species. In addition, between 9 and 58 polymorphic simple sequence repeat regions were identified per species. For two Ericaceae species (Rhododendron brachycarpum and Vaccinium vitis‐idaea) characterised by large chloroplast genomes, de novo assembly failed, but single nucleotide polymorphisms could be identified using reference mapping. These data will be useful for genetic studies of species taxonomic relationships, investigating phylogeographic patterns within species, developing chloroplast‐based markers for conservation genetic studies and has potential application for studies of environmental and ancient DNA.

Geisler, L., A. K. Hansen, J. J. Shaw, and A. Solodovnikov. 2024. Integrative taxonomy suggests species status for Philonthus sideropterus Kolenati, 1846 sp. propr., the former color form of Philonthus splendens (Fabricius, 1793) (Coleoptera: Staphylinidae). Integrative Systematics: Stuttgart Contributions to Natural History 7. https://doi.org/10.18476/2024.210366

Philonthus splendens sideropterus Kolenati, 1846 (Coleoptera: Staphylinidae) was considered a Caucasian intraspecific form of the widespread West Palearctic Philonthus splendens (Fabricius, 1793) with an unclear diagnosis and volatile status. Mostly, it has been considered a variety of P. splendens or, recently, its subspecies, without firm justification. Using material from across the range of P. splendens and methods of integrative taxonomy, we conclude that Philonthus sideropterus, restricted to the forests of the Caucasus in the broad sense and northeastern Asia Minor, and Philonthus splendens, confined to a broad range of habitats in the Euro-Siberian forest belt, represent two allopatric sister species. Their clear divergence in the COI barcode (4.3%), distinct morphological difference in elytral coloration, lack of transitional forms, and allopatric distribution prompted us to raise Philonthus sideropterus sp. propr. to species level. The origin of both sister species from their common ancestor can possibly be explained by the paleoclimatic fluctuations that fragmented the initially or periodically more widespread forest biota into the Eurasian forest belt and the montane forests of the Caucasian region. A lectotype is designated for Philonthus splendens (Fabricius, 1793).