Bionomia will be offline 2024-05-19 12:00 UTC for 1 hr to refresh data from the Global Biodiversity Information Facility.

Science Enabled by Specimen Data

Huang, T., J. Chen, K. E. Hummer, L. A. Alice, W. Wang, Y. He, S. Yu, et al. 2023. Phylogeny of Rubus (Rosaceae): Integrating molecular and morphological evidence into an infrageneric revision. TAXON. https://doi.org/10.1002/tax.12885

Rubus (Rosaceae), one of the most complicated angiosperm genera, contains about 863 species, and is notorious for its taxonomic difficulty. The most recent (1910–1914) global taxonomic treatment of the genus was conducted by Focke, who defined 12 subgenera. Phylogenetic results over the past 25 years suggest that Focke's subdivisions of Rubus are not monophyletic, and large‐scale taxonomic revisions are necessary. Our objective was to provide a comprehensive phylogenetic analysis of the genus based on an integrative evidence approach. Morphological characters, obtained from our own investigation of living plants and examination of herbarium specimens are combined with chloroplast genomic data. Our dataset comprised 196 accessions representing 145 Rubus species (including cultivars and hybrids) and all of Focke's subgenera, including 60 endemic Chinese species. Maximum likelihood analyses inferred phylogenetic relationships. Our analyses concur with previous molecular studies, but with modifications. Our data strongly support the reclassification of several subgenera within Rubus. Our molecular analyses agree with others that only R. subg. Anoplobatus forms a monophyletic group. Other subgenera are para‐ or polyphyletic. We suggest a revised subgeneric framework to accommodate monophyletic groups. Character evolution is reconstructed, and diagnostic morphological characters for different clades are identified and discussed. Based on morphological and molecular evidence, we propose a new classification system with 10 subgenera: R. subg. Anoplobatus, R. subg. Batothamnus, R. subg. Chamaerubus, R. subg. Cylactis, R. subg. Dalibarda, R. subg. Idaeobatus, R. subg. Lineati, R. subg. Malachobatus, R. subg. Melanobatus, and R. subg. Rubus. The revised infrageneric nomenclature inferred from our analyses is provided along with synonymy and type citations. Our new taxonomic backbone is the first systematic and complete global revision of Rubus since Focke's treatment. It offers new insights into deep phylogenetic relationships of Rubus and has important theoretical and practical significance for the development and utilization of these important agronomic crops.

Marcussen, T., H. E. Ballard, J. Danihelka, A. R. Flores, M. V. Nicola, and J. M. Watson. 2022. A Revised Phylogenetic Classification for Viola (Violaceae). Plants 11: 2224. https://doi.org/10.3390/plants11172224

The genus Viola (Violaceae) is among the 40–50 largest genera among angiosperms, yet its taxonomy has not been revised for nearly a century. In the most recent revision, by Wilhelm Becker in 1925, the then-known 400 species were distributed among 14 sections and numerous unranked groups. Here, we provide an updated, comprehensive classification of the genus, based on data from phylogeny, morphology, chromosome counts, and ploidy, and based on modern principles of monophyly. The revision is presented as an annotated global checklist of accepted species of Viola, an updated multigene phylogenetic network and an ITS phylogeny with denser taxon sampling, a brief summary of the taxonomic changes from Becker’s classification and their justification, a morphological binary key to the accepted subgenera, sections and subsections, and an account of each infrageneric subdivision with justifications for delimitation and rank including a description, a list of apomorphies, molecular phylogenies where possible or relevant, a distribution map, and a list of included species. We distribute the 664 species accepted by us into 2 subgenera, 31 sections, and 20 subsections. We erect one new subgenus of Viola (subg. Neoandinium, a replacement name for the illegitimate subg. Andinium), six new sections (sect. Abyssinium, sect. Himalayum, sect. Melvio, sect. Nematocaulon, sect. Spathulidium, sect. Xanthidium), and seven new subsections (subsect. Australasiaticae, subsect. Bulbosae, subsect. Clausenianae, subsect. Cleistogamae, subsect. Dispares, subsect. Formosanae, subsect. Pseudorupestres). Evolution within the genus is discussed in light of biogeography, the fossil record, morphology, and particular traits. Viola is among very few temperate and widespread genera that originated in South America. The biggest identified knowledge gaps for Viola concern the South American taxa, for which basic knowledge from phylogeny, chromosome counts, and fossil data is virtually absent. Viola has also never been subject to comprehensive anatomical study. Studies into seed anatomy and morphology are required to understand the fossil record of the genus.

Xue, T., S. R. Gadagkar, T. P. Albright, X. Yang, J. Li, C. Xia, J. Wu, and S. Yu. 2021. Prioritizing conservation of biodiversity in an alpine region: Distribution pattern and conservation status of seed plants in the Qinghai-Tibetan Plateau. Global Ecology and Conservation 32: e01885. https://doi.org/10.1016/j.gecco.2021.e01885

The Qinghai-Tibetan Plateau (QTP) harbors abundant and diverse plant life owing to its high habitat heterogeneity. However, the distribution pattern of biodiversity hotspots and their conservation status remain unclear. Based on 148,283 high-resolution occurrence coordinates of 13,450 seed plants, w…

Bontrager, M., T. Usui, J. A. Lee‐Yaw, D. N. Anstett, H. A. Branch, A. L. Hargreaves, C. D. Muir, and A. L. Angert. 2021. Adaptation across geographic ranges is consistent with strong selection in marginal climates and legacies of range expansion. Evolution 75: 1316–1333. https://doi.org/10.1111/evo.14231

Every species experiences limits to its geographic distribution. Some evolutionary models predict that populations at range edges are less well‐adapted to their local environments due to drift, expansion load, or swamping gene flow from the range interior. Alternatively, populations near range edges…

Saldaña‐López, A., M. Vilà, F. Lloret, J. Manuel Herrera, and P. González‐Moreno. 2021. Assembly of species’ climatic niches of coastal communities does not shift after invasion Z. Botta‐Dukát [ed.],. Journal of Vegetation Science 32. https://doi.org/10.1111/jvs.12989

Question: Do invasions by invasive plant species with contrasting trait profiles (Arctotheca calendula, Carpobrotus spp., Conyza bonariensis, and Opuntia dillenii) change the climatic niche of coastal plant communities? Location: Atlantic coastal habitats in Huelva (Spain). Methods: We identifi…

Ebersbach, J., N. Tkach, M. Röser, and A. Favre. 2020. The Role of Hybridisation in the Making of the Species-Rich Arctic-Alpine Genus Saxifraga (Saxifragaceae). Diversity 12: 440. https://doi.org/10.3390/d12110440

Evolutionary processes fuelling rapid species diversification are not yet fully understood, although their major contribution to overall patterns of plant biodiversity is well established. Hybridisation is among the least understood of these processes, despite its multifaceted role in speciation pro…

van Treuren, R., R. Hoekstra, R. Wehrens, and T. van Hintum. 2020. Effects of climate change on the distribution of crop wild relatives in the Netherlands in relation to conservation status and ecotope variation. Global Ecology and Conservation 23: e01054. https://doi.org/10.1016/j.gecco.2020.e01054

Crop wild relatives (CWR) are wild plant taxa that are genetically related to a cultivated species and are considered rich sources of useful traits for crop improvement. CWR are generally underrepresented in genebanks, while their survival in nature is not guaranteed. Inventories and risk analyses a…

Ringelberg, J. J., N. E. Zimmermann, A. Weeks, M. Lavin, and C. E. Hughes. 2020. Biomes as evolutionary arenas: Convergence and conservatism in the trans‐continental succulent biome A. Moles [ed.],. Global Ecology and Biogeography 29: 1100–1113. https://doi.org/10.1111/geb.13089

Aim: Historically, biomes have been defined based on their structurally and functionally similar vegetation, but there is debate about whether these similarities are superficial, and about how biomes are defined and mapped. We propose that combined assessment of evolutionary convergence of plant fun…

Sheppard, C. S., and F. M. Schurr. 2018. Biotic resistance or introduction bias? Immigrant plant performance decreases with residence times over millennia. Global Ecology and Biogeography. https://doi.org/10.1111/geb.12844

Aim: Invasions are dynamic processes. Invasive spread causes the geographical range size of alien species to increase with residence time. However, with time native competitors and antagonists can adapt to invaders. This build‐up of biotic resistance may eventually limit the invader’s performance an…

Wan, J.-Z., C.-J. Wang, and F.-H. Yu. 2019. Large-scale environmental niche variation between clonal and non-clonal plant species: Roles of clonal growth organs and ecoregions. Science of The Total Environment 652: 1071–1076. https://doi.org/10.1016/j.scitotenv.2018.10.280

Clonal plant species can produce genetically identical and potentially independent offspring, and dominate a variety of habitats. The divergent evolutionary mechanisms between clonal and non-clonal plants are interesting areas of ecological research. A number of studies have shown that the environme…