Science Enabled by Specimen Data
Gomes, L. B., G. R. Gonçalves, S. J. E. Velazco, K. F. de Moraes, O. P. Marques Neto, F. da S. Santos, M. P. D. Santos, and M. G. M. Lima. 2024. Conservation challenges for Brazilian primates and the role of protected areas in a changing climate. Scientific Reports 14. https://doi.org/10.1038/s41598-024-82717-9
The negative effects of land-use changes on biodiversity significantly contribute to climate change. Primates are among the animals most affected by these changes, because of their high dependence on forest cover where a lack of forest connectivity can limit their dispersal and segregate their populations. In this sense, protected areas (PAs) are crucial for conserving endangered primates, especially endemic species. Using species distribution models, we assessed the impact of climate change and deforestation on the geographic distribution of 35 endangered Brazilian primates. We also evaluated the potential of PAs to retain suitable habitats for primate species under current conditions (baseline) and four future climate scenarios (optimistic and pessimistic, both for the periods 2041–2060 and 2061–2080), as well as the capacity of PAs to preserve species’ geographic representation both now and in the future. Our findings indicate that most primate taxa would experience a significant loss of suitable area (> 90%) in both pessimistic and optimistic scenarios. For future scenarios, the loss could exceed 98% for 10 taxa, particularly Amazonian species. Regarding PAs potential to retain suitable areas for maintaining the richness of threatened primates, only 8.6% harbor more species than expected by chance (1–6 taxa) in the baseline conditions, with a decrease in future scenarios. Results suggest that taxa already threatened with extinction are inadequately protected by PAs in the baseline conditions and even less so in future scenarios. Given the restricted geographic distribution and current population decline for most taxa, we emphasize the need to increase the number of PAs to ensure population viability and prevent future extinction.
Botero‐Cañola, S., C. Torhorst, N. Canino, L. Beati, K. C. O’Hara, A. M. James, and S. M. Wisely. 2024. Integrating Systematic Surveys With Historical Data to Model the Distribution of Ornithodoros turicata americanus, a Vector of Epidemiological Concern in North America. Ecology and Evolution 14. https://doi.org/10.1002/ece3.70547
Globally, vector‐borne diseases are increasing in distribution and frequency, affecting humans, domestic animals, and wildlife. Science‐based management and prevention of these diseases requires a sound understanding of the distribution and environmental requirements of the vectors and hosts involved in disease transmission. Integrated Species Distribution Models (ISDM) account for diverse data types through hierarchical modeling and represent a significant advancement in species distribution modeling. We assessed the distribution of the soft tick subspecies Ornithodoros turicata americanus. This tick species is a potential vector of African swine fever virus (ASFV), a pathogen responsible for an ongoing global epizootic that threatens agroindustry worldwide. Given the novelty of this method, we compared the results to a conventional Maxent SDM and validated the results through data partitioning. Our input for the model consisted of systematically collected detection data from 591 sampled field sites and 12 historical species records, as well as four variables describing climatic and soil characteristics. We found that a combination of climatic variables describing seasonality and temperature extremes, along with the amount of sand in the soil, determined the predicted intensity of occurrence of this tick species. When projected in geographic space, this distribution model predicted 62% of Florida as suitable habitat for this tick species. The ISDM presented a higher TSS and AUC than the Maxent conventional model, while sensitivity was similar between both models. Our case example shows the utility of ISDMs in disease ecology studies and highlights the broad range of geographic suitability for this important disease vector. These results provide important foundational information to inform future risk assessment work for tick‐borne relapsing fever surveillance and potential ASF introduction and maintenance in the United States.
Acarer, A. 2024. Rasprostranjenost smeđeg medvjeda (Ursus arctos L.) u Europi. Šumarski list 148: 261–272. https://doi.org/10.31298/sl.148.5-6.4
Brown bear, described as the largest carnivore in Europe, has a large body. While the brown bear can move safely and comfortably in its own habitat thanks to its large size, it is challenging for them to travel to different habitats over long distances. Therefore, negative changes that may occur with global warming may cause the existing brown bear populations and their habitats to be restricted, reduced, or destroyed. In this study, it was aimed to reveal the effect of Chelsa climate envelope models for current and future years on brown bear habitats in Europe. For this purpose, it was used the MaxEnt method, frequently used in wildlife species distribution modelling. The current habitat suitability model of the brown bear was in the “good model” category with the training data set ROC value of 0.834 and the test data set ROC value of 0.828. The variables contributing to the current model are annual range of temperature (48.2%), mean monthly precipitation amount of the warmest quarter (22.1%), temperature seasonality (18.2%) and annual precipitation amount (11.5%), respectively. When the mapping results used the variables contributed to the brown bear current habitat suitability model are compared with the IUCN inventory results, the current brown bear habitats in Europe will change regionally. However, it has been determined that brown bear habitats will shrink according to the SSP126 Chelsa climate scenario of the year 2100, and these habitats will fragment according to the SSP370 scenario, and that brown bear habitats disappear in some regions in the SSP585 scenario.
Luna-Aranguré, C., and E. Vázquez-Domínguez. 2024. Bears into the Niche-Space: Phylogeography and Phyloclimatic Model of the Family Ursidae. Diversity 16: 223. https://doi.org/10.3390/d16040223
Assessing niche evolution remains an open question and an actively developing area of study. The family Ursidae consists of eight extant species for which, despite being the most studied family of carnivores, little is known about the influence of climate on their evolutionary history and diversification. We evaluated their evolutionary patterns based on a combined phylogeography and niche modeling approach. We used complete mitogenomes, estimated divergence times, generated ecological niche models and applied a phyloclimatic model to determine the species evolutionary and diversification patterns associated with their respective environmental niches. We inferred the family evolutionary path along the environmental conditions of maximum temperature and minimum precipitation, from around 20 million years ago to the present. Our findings show that the phyloclimatic niches of the bear species occupy most of the environmental space available on the planet, except for the most extreme warm conditions, in accordance with the wide geographic distribution of Ursidae. Moreover, some species exhibit broader environmental niches than others, and in some cases, they explore precipitation axes more extensively than temperature axes or vice versa, suggesting that not all species are equally adaptable to these variables. We were able to elucidate potential patterns of niche conservatism and evolution, as well as niche overlapping, suggesting interspecific competitive exclusion between some of the bear species. We present valuable insights into the ecological and evolutionary processes driving the diversification and distribution of the Ursidae. Our approach also provides essential information for guiding effective conservation strategies, particularly in terms of distribution limits in the face of climate change.
Tang, T., Y. Zhu, Y.-Y. Zhang, J.-J. Chen, J.-B. Tian, Q. Xu, B.-G. Jiang, et al. 2024. The global distribution and the risk prediction of relapsing fever group Borrelia: a data review with modelling analysis. The Lancet Microbe. https://doi.org/10.1016/s2666-5247(23)00396-8
Background The recent discovery of emerging relapsing fever group Borrelia (RFGB) species, such as Borrelia miyamotoi, poses a growing threat to public health. However, the global distribution and associated risk burden of these species remain uncertain. We aimed to map the diversity, distribution, and potential infection risk of RFGB.MethodsWe searched PubMed, Web of Science, GenBank, CNKI, and eLibrary from Jan 1, 1874, to Dec 31, 2022, for published articles without language restriction to extract distribution data for RFGB detection in vectors, animals, and humans, and clinical information about human patients. Only articles documenting RFGB infection events were included in this study, and data for RFGB detection in vectors, animals, or humans were composed into a dataset. We used three machine learning algorithms (boosted regression trees, random forest, and least absolute shrinkage and selection operator logistic regression) to assess the environmental, ecoclimatic, biological, and socioeconomic factors associated with the occurrence of four major RFGB species: Borrelia miyamotoi, Borrelia lonestari, Borrelia crocidurae, and Borrelia hermsii; and mapped their worldwide risk level.FindingsWe retrieved 13 959 unique studies, among which 697 met the selection criteria and were used for data extraction. 29 RFGB species have been recorded worldwide, of which 27 have been identified from 63 tick species, 12 from 61 wild animals, and ten from domestic animals. 16 RFGB species caused human infection, with a cumulative count of 26 583 cases reported from Jan 1, 1874, to Dec 31, 2022. Borrelia recurrentis (17 084 cases) and Borrelia persica (2045 cases) accounted for the highest proportion of human infection. B miyamotoi showed the widest distribution among all RFGB, with a predicted environmentally suitable area of 6·92 million km2, followed by B lonestari (1·69 million km2), B crocidurae (1·67 million km2), and B hermsii (1·48 million km2). The habitat suitability index of vector ticks and climatic factors, such as the annual mean temperature, have the most significant effect among all predictive models for the geographical distribution of the four major RFGB species.InterpretationThe predicted high-risk regions are considerably larger than in previous reports. Identification, surveillance, and diagnosis of RFGB infections should be prioritised in high-risk areas, especially within low-income regions.FundingNational Key Research and Development Program of China.
Leão, C. F., M. S. Lima Ribeiro, K. Moraes, G. S. R. Gonçalves, and M. G. M. Lima. 2023. Climate change and carnivores: shifts in the distribution and effectiveness of protected areas in the Amazon. PeerJ 11: e15887. https://doi.org/10.7717/peerj.15887
Background Carnivore mammals are animals vulnerable to human interference, such as climate change and deforestation. Their distribution and persistence are affected by such impacts, mainly in tropical regions such as the Amazon. Due to the importance of carnivores in the maintenance and functioning of the ecosystem, they are extremely important animals for conservation. We evaluated the impact of climate change on the geographic distribution of carnivores in the Amazon using Species Distribution Models (SDMs). Do we seek to answer the following questions: (1) What is the effect of climate change on the distribution of carnivores in the Amazon? (2) Will carnivore species lose or gain representation within the Protected Areas (PAs) of the Amazon in the future? Methods We evaluated the distribution area of 16 species of carnivores mammals in the Amazon, based on two future climate scenarios (RCP 4.5 and RCP 8.5) for the year 2070. For the construction of the SDMs we used bioclimatic and vegetation cover variables (land type). Based on these models, we calculated the area loss and climate suitability of the species, as well as the effectiveness of the protected areas inserted in the Amazon. We estimated the effectiveness of PAs on the individual persistence of carnivores in the future, for this, we used the SDMs to perform the gap analysis. Finally, we analyze the effectiveness of PAs in protecting taxonomic richness in future scenarios. Results The SDMs showed satisfactory predictive performance, with Jaccard values above 0.85 and AUC above 0.91 for all species. In the present and for the future climate scenarios, we observe a reduction of potencial distribution in both future scenarios (RCP4.5 and RCP8.5), where five species will be negatively affected by climate change in the RCP 4.5 future scenario and eight in the RCP 8.5 scenario. The remaining species stay stable in terms of total area. All species in the study showed a loss of climatic suitability. Some species lost almost all climatic suitability in the RCP 8.5 scenario. According to the GAP analysis, all species are protected within the PAs both in the current scenario and in both future climate scenarios. From the null models, we found that in all climate scenarios, the PAs are not efficient in protecting species richness.
Falaschi, M., G. F. Ficetola, A. Viviano, G. Mazza, and E. Mori. 2023. Environmental suitability and potential range expansion of the Eurasian beaver in Italy. Animal Conservation. https://doi.org/10.1111/acv.12910
Reintroduction and rewilding initiatives are key strategies to reverse human impacts on ecosystems and re‐establish natural processes. However, rewilding may involve complex management scenarios, because many expanding species can have economic impacts and cause human–wildlife conflicts. Conflicts can be particularly challenging when carnivores, large herbivores and ecosystem engineers are involved. The Eurasian beaver (Castor fiber) is a key ecosystem engineer that was once present in a large part of the Palearctic, but in Medieval times underwent a severe decline due to the joint effects of habitat loss and hunting. Subsequent legal protection and reintroductions triggered the recovery of the species through most of its original range. Eurasian beavers recently started the recolonization of Italy, because of the joint effects of natural dispersal (from Austria to northern Italy) and illegal reintroductions (central Italy). The lack of data on the most likely colonization routes hampers appropriate management of this species. Here, we identified the areas where beaver populations are most likely to arrive in the near future within Europe, with a specific focus on Italy. First, we developed spatially cross‐validated species distribution models to identify the areas with the highest suitability for the Eurasian beaver in Europe. Second, we used connectivity modelling to assess the possible expansion routes of this species in Italy. Large areas of Europe are suitable for the beaver and may soon be colonized. The connectivity model showed a high potential for expansion from central Italy to surrounding areas, while the high isolation of northern Italy populations suggests a slower expansion. Our results can help environmental managers to understand where to focus both the future monitoring of beaver populations and actions aimed at preventing and mitigating possible human–wildlife conflicts that could arise from the expansion of an environmental engineer such as the beaver.
Vázquez-Rueda, E., A. P. Cuervo-Robayo, and J. Ayala-Berdon. 2023. Forest dependency could be more important than dispersal capacity for habitat connectivity of four species of insectivorous bats inhabiting a highly anthropized region in central Mexico. Mammal Research. https://doi.org/10.1007/s13364-023-00707-0
The maintenance, restoration, and improvement of habitat structure are critical for biodiversity conservation. Under this context, studies assessing habitat connectivity become essential, especially those focused on anthropized regions holding high species richness. We calculated the habitat connectivity of four species of insectivorous bats with different dispersal capacity and habitat preferences in a highly anthropized region in central Mexico, Idionycteris phyllotis and Myotis thysanodes , with a high dispersal capacity and forest-dependency, and Eptesicus fuscus with a low dispersal capacity, and Tadarida brasiliensis with a high dispersal capacity, as the more tolerant bat species to anthropogenic disturbance. We developed niche-based species distribution models to identify suitable habitat patches for each species. We then assessed habitat connectivity and the importance of suitable habitat patches for maintaining connectivity using a graph theory approach. Our results showed that forest dependency was most important than dispersal capacity for connectivity. We also found that the Iztaccíhuatl-Popocatépetl mountain, a National Park comprising 4.2% of natural vegetation in the study area, was the most critical patch for maintaining connectivity for most of the study species. Our study demonstrates the importance of conserving the remnants of natural vegetation for maintaining habitat connectivity within a fragmented landscape and demonstrates the importance of conserving protected areas as well as other remnants of vegetation for the maintenance of habitat connectivity within a fragmented landscape.
de Oliveira, G. L., A. B. Viana‐Junior, P. H. S. Trindade, I. R. dos Santos, P. C. R. de Almeida‐Maués, F. G. Carvalho, D. P. Silva, et al. 2023. Wild canids and the ecological traps facing the climate change and deforestation in the Amazon Forest. Ecology and Evolution 13. https://doi.org/10.1002/ece3.10150
Ecological traps occur when species choose to settle in lower‐quality habitats, even if this reduces their survival or productivity. This happens in situations of drastic environmental changes, resulting from anthropogenic pressures. In long term, this could mean the extinction of the species. We investigated the dynamics of occurrence and distribution of three canid species (Atelocynus microtis, Cerdocyon thous, and Spheotos venaticus) considering human threats to their habitats in the Amazon Rainforest. We analyzed the environmental thresholds for the occurrence of these species and related to the future projections of climatic niches for each one. All three species will be negatively affected by climate change in the future, with losses of up to 91% of the suitable area of occurrence in the Brazilian Amazon. A. microtis appear to be more forest‐dependent and must rely on the goodwill of decision‐makers to be maintained in the future. For C. thous and S. venaticus, climatic variables and those associated with anthropogenic disturbances that modulate their niches today may not act the same way in the future. Even though C. thous is least dependent on the Amazon Forest; this species may be affected in the future due to the ecological traps. S. venaticus, can also undergo the same process, but perhaps more drastically due to the lower ecological plasticity of this species compared to C. thous. Our results suggest that the ecological traps may put these two species at risk in the future. Using the canid species as a model, we had the opportunity to investigate these ecological effects that can affect a large part of the Amazonian fauna in the current scenario. Considering the high degree of environmental degradation and deforestation in the Amazon Rainforest, the theory of ecological traps must be discussed at the same level as the habitat loss, considering the strategies for preserving the Amazon biodiversity.
Barnes, C. L., N. W. Blay, and S. M. Wilder. 2023. Thermal tolerances of different life stages, sexes, and species of widow spiders (Araneae: Theridiidae). The Journal of Arachnology 51. https://doi.org/10.1636/joa-s-21-044
(no abstract available)