Science Enabled by Specimen Data

Hill, A., M. F. T. Jiménez, N. Chazot, C. Cássia‐Silva, S. Faurby, L. Herrera‐Alsina, and C. D. Bacon. 2023. Apparent effect of range size and fruit colour on palm diversification may be spurious. Journal of Biogeography.

Aim Fruit selection by animal dispersers with different mobility directly impacts plant geographical range size, which, in turn, may impact plant diversification. Here, we examine the interaction between fruit colour, range size and diversification rate in palms by testing two hypotheses: (1) species with fruit colours attractive to birds have larger range sizes due to high dispersal ability and (2) disperser mobility affects whether small or large range size has higher diversification, and intermediate range size is expected to lead to the highest diversification rate regardless of disperser. Location Global. Time Period Contemporary (or present). Major Taxa Studied Palms (Arecaceae). Methods Palm species were grouped based on likely animal disperser group for given fruit colours. Range sizes were estimated by constructing alpha convex hull polygons from distribution data. We examined disperser group, range size or an interaction of both as possible drivers of change in diversification rate over time in a likelihood dynamic model (Several Examined State-dependent Speciation and Extinction [SecSSE]). Models were fitted, rate estimates were retrieved and likelihoods were compared to those of appropriate null models. Results Species with fruit colours associated with mammal dispersal had larger ranges than those with colours associated with bird dispersal. The best fitting SecSSE models indicated that the examined traits were not the primary driver of the heterogeneity in diversification rates in the model. Extinction rate complexity had a marked impact on model performance and on diversification rates. Main Conclusions Two traits related to dispersal mobility, range size and fruit colour, were not identified as the main drivers of diversification in palms. Increased model extinction rate complexity led to better performing models, which indicates that net diversification should be estimated rather than speciation alone. However, increased complexity may lead to incorrect SecSSE model conclusions without careful consideration. Finally, we find palms with more mobile dispersers do not have larger range sizes, meaning other factors are more important determinants of range size.

Oliveira-Dalland, L. G., L. R. V. Alencar, L. R. Tambosi, P. A. Carrasco, R. M. Rautsaw, J. Sigala-Rodriguez, G. Scrocchi, and M. Martins. 2022. Conservation gaps for Neotropical vipers: Mismatches between protected areas, species richness and evolutionary distinctiveness. Biological Conservation 275: 109750.

The continuous decline in biodiversity despite global efforts to create new protected areas calls into question the effectiveness of these areas in conserving biodiversity. Numerous habitats are absent from the global protected area network, and certain taxonomic groups are not being included in conservation planning. Here, we analyzed the level of protection that the current protected area system provides to viper species in the Neotropical region through a conservation gap analysis. We used distribution size and degree of threat to set species-specific conservation goals for 123 viper species in the form of minimum percentage of their distribution that should be covered by protected areas, and assessed the level of protection provided for each species by overlapping their distribution with protected areas of strict protection. Furthermore, using species richness and evolutionary distinctiveness as priority indicators, we conducted a spatial association analysis to detect areas of special concern. We found that most viper species have <1/4 of their distribution covered by protected areas, including 22 threatened species. Also, the large majority of cells containing high levels of species richness were significantly absent from protected areas, while evolutionary distinctiveness was particularly unprotected in regions with relatively low species richness, like northern Mexico and the Argentinian dry Chaco. Our results provide further evidence that vipers are largely being excluded from conservation planning, leaving them exposed to serious threats that can lead to population decline and ultimately extinction.

Sánchez, C. A., H. Li, K. L. Phelps, C. Zambrana-Torrelio, L.-F. Wang, P. Zhou, Z.-L. Shi, et al. 2022. A strategy to assess spillover risk of bat SARS-related coronaviruses in Southeast Asia. Nature Communications 13.

Emerging diseases caused by coronaviruses of likely bat origin (e.g., SARS, MERS, SADS, COVID-19) have disrupted global health and economies for two decades. Evidence suggests that some bat SARS-related coronaviruses (SARSr-CoVs) could infect people directly, and that their spillover is more frequent than previously recognized. Each zoonotic spillover of a novel virus represents an opportunity for evolutionary adaptation and further spread; therefore, quantifying the extent of this spillover may help target prevention programs. We derive current range distributions for known bat SARSr-CoV hosts and quantify their overlap with human populations. We then use probabilistic risk assessment and data on human-bat contact, human viral seroprevalence, and antibody duration to estimate that a median of 66,280 people (95% CI: 65,351–67,131) are infected with SARSr-CoVs annually in Southeast Asia. These data on the geography and scale of spillover can be used to target surveillance and prevention programs for potential future bat-CoV emergence. Coronaviruses may spill over from bats to humans. This study uses epidemiological data, species distribution models, and probabilistic risk assessment to map overlap among people and SARSr-CoV bat hosts and estimate how many people are infected with bat-origin SARSr-CoVs in Southeast Asia annually.

Rautsaw, R. M., G. Jiménez-Velázquez, E. P. Hofmann, L. R. V. Alencar, C. I. Grünwald, M. Martins, P. Carrasco, et al. 2022. VenomMaps: Updated species distribution maps and models for New World pitvipers (Viperidae: Crotalinae). Scientific Data 9.

Beyond providing critical information to biologists, species distributions are useful for naturalists, curious citizens, and applied disciplines including conservation planning and medical intervention. Venomous snakes are one group that highlight the importance of having accurate information given their cosmopolitan distribution and medical significance. Envenomation by snakebite is considered a neglected tropical disease by the World Health Organization and venomous snake distributions are used to assess vulnerability to snakebite based on species occurrence and antivenom/healthcare accessibility. However, recent studies highlighted the need for updated fine-scale distributions of venomous snakes. Pitvipers (Viperidae: Crotalinae) are responsible for >98% of snakebites in the New World. Therefore, to begin to address the need for updated fine-scale distributions, we created VenomMaps, a database and web application containing updated distribution maps and species distribution models for all species of New World pitvipers. With these distributions, biologists can better understand the biogeography and conservation status of this group, researchers can better assess vulnerability to snakebite, and medical professionals can easily discern species found in their area. Measurement(s) Species Distributions Technology Type(s) Geographic Information System • Species Distribution Model (MaxEnt/kuenm) Factor Type(s) Occurrence Records • Environmental Data Sample Characteristic - Organism Crotalinae Sample Characteristic - Location North America • South America

Freitas, C., F. T. Brum, C. Cássia-Silva, L. Maracahipes, M. B. Carlucci, R. G. Collevatti, and C. D. Bacon. 2021. Incongruent Spatial Distribution of Taxonomic, Phylogenetic, and Functional Diversity in Neotropical Cocosoid Palms. Frontiers in Forests and Global Change 4.

Biodiversity can be quantified by taxonomic, phylogenetic, and functional diversity. Current evidence points to a lack of congruence between the spatial distribution of these facets due to evolutionary and ecological constraints. A lack of congruence is especially evident between phylogenetic and ta…

Xue, T., S. R. Gadagkar, T. P. Albright, X. Yang, J. Li, C. Xia, J. Wu, and S. Yu. 2021. Prioritizing conservation of biodiversity in an alpine region: Distribution pattern and conservation status of seed plants in the Qinghai-Tibetan Plateau. Global Ecology and Conservation 32: e01885.

The Qinghai-Tibetan Plateau (QTP) harbors abundant and diverse plant life owing to its high habitat heterogeneity. However, the distribution pattern of biodiversity hotspots and their conservation status remain unclear. Based on 148,283 high-resolution occurrence coordinates of 13,450 seed plants, w…

Whitman, M., R. S. Beaman, R. Repin, K. Kitayama, S. Aiba, and S. E. Russo. 2021. Edaphic specialization and vegetation zones define elevational range‐sizes for Mt Kinabalu regional flora. Ecography 44: 1698–1709.

Identifying physical and ecological boundaries that limit where species can occur is important for predicting how those species will respond to global change. The island of Borneo encompasses a wide range of habitats that support some of the highest richness on Earth, making it an ideal location for…

Wieringa, J. G., B. C. Carstens, and H. L. Gibbs. 2021. Predicting migration routes for three species of migratory bats using species distribution models. PeerJ 9: e11177.

Understanding seasonal variation in the distribution and movement patterns of migratory species is essential to monitoring and conservation efforts. While there are many species of migratory bats in North America, little is known about their seasonal movements. In terms of conservation, this is impo…

Cooper, N., A. L. Bond, J. L. Davis, R. Portela Miguez, L. Tomsett, and K. M. Helgen. 2019. Sex biases in bird and mammal natural history collections. Proceedings of the Royal Society B: Biological Sciences 286: 20192025.

Natural history specimens are widely used across ecology, evolutionary biology and conservation. Although biological sex may influence all of these areas, it is often overlooked in large-scale studies using museum specimens. If collections are biased towards one sex, studies may not be representativ…

Li, X., B. Li, G. Wang, X. Zhan, and M. Holyoak. 2020. Deeply digging the interaction effect in multiple linear regressions using a fractional-power interaction term. MethodsX 7: 101067.

In multiple regression Y ~ β0 + β1X1 + β2X2 + β3X1 X2 + ɛ., the interaction term is quantified as the product of X1 and X2. We developed fractional-power interaction regression (FPIR), using βX1M X2N as the interaction term. The rationale of FPIR is that the slopes of Y-X1 regression along the X2 gr…