Science Enabled by Specimen Data
Alkhalifah, D. H. M., E. Damra, M. B. Melhem, and W. N. Hozzein. 2023. Fungus under a Changing Climate: Modeling the Current and Future Global Distribution of Fusarium oxysporum Using Geographical Information System Data. Microorganisms 11: 468. https://doi.org/10.3390/microorganisms11020468
The impact of climate change on biodiversity has been the subject of numerous research in recent years. The multiple elements of climate change are expected to affect all levels of biodiversity, including microorganisms. The common worldwide fungus Fusarium oxysporum colonizes plant roots as well as soil and several other substrates. It causes predominant vascular wilt disease in different strategic crops such as banana, tomato, palm, and even cotton, thereby leading to severe losses. So, a robust maximum entropy algorithm was implemented in the well-known modeling program Maxent to forecast the current and future global distribution of F. oxysporum under two representative concentration pathways (RCPs 2.6 and 8.5) for 2050 and 2070. The Maxent model was calibrated using 1885 occurrence points. The resulting models were fit with AUC and TSS values equal to 0.9 (±0.001) and 0.7, respectively. Increasing temperatures due to global warming caused differences in habitat suitability between the current and future distributions of F. oxysporum, especially in Europe. The most effective parameter of this fungus distribution was the annual mean temperature (Bio 1); the two-dimensional niche analysis indicated that the fungus has a wide precipitation range because it can live in both dry and rainy habitats as well as a range of temperatures in which it can live to certain limits. The predicted shifts should act as an alarm sign for decision makers, particularly in countries that depend on such staple crops harmed by the fungus.
Xue, T., S. R. Gadagkar, T. P. Albright, X. Yang, J. Li, C. Xia, J. Wu, and S. Yu. 2021. Prioritizing conservation of biodiversity in an alpine region: Distribution pattern and conservation status of seed plants in the Qinghai-Tibetan Plateau. Global Ecology and Conservation 32: e01885. https://doi.org/10.1016/j.gecco.2021.e01885
The Qinghai-Tibetan Plateau (QTP) harbors abundant and diverse plant life owing to its high habitat heterogeneity. However, the distribution pattern of biodiversity hotspots and their conservation status remain unclear. Based on 148,283 high-resolution occurrence coordinates of 13,450 seed plants, w…
Schneider, K., D. Makowski, and W. van der Werf. 2021. Predicting hotspots for invasive species introduction in Europe. Environmental Research Letters 16: 114026. https://doi.org/10.1088/1748-9326/ac2f19
Plant pest invasions cost billions of Euros each year in Europe. Prediction of likely places of pest introduction could greatly help focus efforts on prevention and control and thus reduce societal costs of pest invasions. Here, we test whether generic data-driven risk maps of pest introduction, val…
Qu, J., Y. Xu, Y. Cui, S. Wu, L. Wang, X. Liu, Z. Xing, et al. 2021. MODB: a comprehensive mitochondrial genome database for Mollusca. Database 2021. https://doi.org/10.1093/database/baab056
Mollusca is the largest marine phylum, comprising about 23% of all named marine organisms, Mollusca systematics are still in flux, and an increase in human activities has affected Molluscan reproduction and development, strongly impacting diversity and classification. Therefore, it is necessary to e…
de Oliveira, M. H. V., B. M. Torke, and T. E. Almeida. 2021. An inventory of the ferns and lycophytes of the Lower Tapajós River Basin in the Brazilian Amazon reveals collecting biases, sampling gaps, and previously undocumented diversity. Brittonia 73: 459–480. https://doi.org/10.1007/s12228-021-09668-7
Ferns and lycophytes are an excellent group for conservation and species distribution studies because they are closely related to environmental changes. In this study, we analyzed collection gaps, sampling biases, richness distribution, and the species conservation effectiveness of protected areas i…
Brandt, A. J., P. J. Bellingham, R. P. Duncan, T. R. Etherington, J. D. Fridley, C. J. Howell, P. E. Hulme, et al. 2020. Naturalised plants transform the composition and function of the New Zealand flora. Biological Invasions 23: 351–366. https://doi.org/10.1007/s10530-020-02393-4
The New Zealand flora has a high proportion of endemic species but has been invaded by almost the same number of non-native plant species. To support management of invasive plant species, we provide an updated inventory of New Zealand’s naturalised flora and compare it with the native flora to ident…
Brightly, W. H., S. E. Hartley, C. P. Osborne, K. J. Simpson, and C. A. E. Strömberg. 2020. High silicon concentrations in grasses are linked to environmental conditions and not associated with C 4 photosynthesis. Global Change Biology 26: 7128–7143. https://doi.org/10.1111/gcb.15343
The uptake and deposition of silicon (Si) as silica phytoliths is common among land plants and is associated with a variety of functions. Among these, herbivore defense has received significant attention, particularly with regards to grasses and grasslands. Grasses are well known for their high sili…
Goodwin, Z. A., P. Muñoz-Rodríguez, D. J. Harris, T. Wells, J. R. I. Wood, D. Filer, and R. W. Scotland. 2020. How long does it take to discover a species? Systematics and Biodiversity 18: 784–793. https://doi.org/10.1080/14772000.2020.1751339
The description of a new species is a key step in cataloguing the World’s flora. However, this is only a preliminary stage in a long process of understanding what that species represents. We investigated how long the species discovery process takes by focusing on three key stages: 1, the collection …
Talhinhas, P. 2019. An annotated checklist of rust fungi (Pucciniales) occurring in Portugal. Sydowia An International Journal of Mycology 71: 65–84. https://doi.org/10.12905/0380.sydowia71-2019-0065
In this work we have retrieved and analysed data for 2319 occurrences of rust fungi from 246 Pucciniales taxa in Portugal based on 115 publications and our own surveys, totalizing 683 rust taxon-host taxon unique combinations. This list was updated according to current taxonomic framework and georef…