Science Enabled by Specimen Data
Menegotto, A., D. P. Tittensor, R. K. Colwell, and T. F. Rangel. 2024. Sampling Simulation in a Virtual Ocean Reveals Strong Sampling Effect in Marine Diversity Patterns. Global Ecology and Biogeography 34. https://doi.org/10.1111/geb.13952
ABSTRACTAimUndersampling and other sources of sampling bias pose significant issues in marine macroecology, particularly when shaping conservation and management decisions. Yet, determining the extent to which such biases impact our understanding of marine diversity remains elusive. Here, utilising empirical data on sampling efforts, we sampled from virtually established species distributions to evaluate how deep is the influence of sampling bias on estimations of the latitudinal gradient in marine diversity.LocationAtlantic Ocean.Time PeriodPresent.Taxa StudiedOphiuroidea.MethodsWe developed a computer simulation that implements two null models of species distribution (the geometric constraints and the area model) in a two‐dimensional domain, replicates the latitudinal distribution of historical sampling efforts and then quantifies diversity metrics (observed and estimated species richness) and sample completeness for each grid cell and latitudinal band.ResultsWe found consistent patterns of observed species richness across models, noting peaks at midlatitudes regardless of whether the true richness was unimodal or flat. Dips in equatorial diversity persisted even after using different methods of species richness estimation. Additional simulations showed that estimators' accuracy improved with increased sampling efforts, but only when samples were randomly distributed. Spatially aggregated samples inflate completeness without necessarily enhancing estimators' accuracy.Main ConclusionsThis finding emphasises the imperative of bolstering sampling efforts at tropical latitudes and deploying robust statistical techniques to mitigate undersampling effects. Meanwhile, we suggest considering sampling bias as an alternative null hypothesis for recorded marine diversity patterns.
Crespo, D., S. Leston, L. D. Rato, A. B. Moutinho, F. Martinho, S. C. Novais, M. A. Pardal, and M. F. L. Lemos. 2024. The effects of different densities of Asparagopsis armata (Harvey, 1855) seaweed on the clam Ruditapes philippinarum (A. Adams and Reeve, 1850): Insights from a laboratory assessment. Marine Environmental Research 202: 106812. https://doi.org/10.1016/j.marenvres.2024.106812
Several invasive species can occupy the same geographic area. Interaction between species depends on several factors, and the results of such interactions can be highly diverse. Asparagopsis armata is a invasive red seaweed whose exudates contain a cocktail of toxic halogenated compounds. In this study, the impact of high and low levels of A. armata on the bivalve Ruditapes philippinarum was assessed in a laboratory experiment. Both are prominent invasive species in Europe and could share the same habitats. The effects of the algae were measured at different biological levels, framed by an integrated approach: bioturbation as a proxy for organismal activity and behaviour within the sediment, and several subcellular biomarkers related to oxidative stress and damage, energy metabolism, detoxification, and neurotransmission. While bioturbation revealed the effects of exudates on the bivalve, with a decrease in most parameters when exposed to the different amounts of algae, only marginal responses were found for biomarkers, suggesting a possible temporal decoupling between the behavioural response and the intrinsic biochemical environment. These results denote that despite the recognized potential of biomarkers to address a myriad of situations, a proxy for higher levels of biological organization, such as behaviour, for its integration of lower-level effects, is a robust tool to address complex and lesser-known mixtures of stressors.
Nekrasova, O., A. Lepekha, M. Pupins, A. Škute, A. Čeirāns, K. Theissinger, J.-Y. Georges, and Y. Kvach. 2024. Prospects for the Spread of the Invasive Oriental River Prawn Macrobrachium nipponense: Potentials and Risks for Aquaculture in Europe. Water 16: 2760. https://doi.org/10.3390/w16192760
Climate change has amplified the threat posed by aquatic invasive species as potential disruptors of biodiversity and ecosystem functioning. Species Distribution Models (MaxEnt) based on original data and ecological variables have identified contemporary seven global centers of the oriental rivel prawn Macrobrachium nipponense distribution: the native range in East Asia, Northern, Western and Eastern Europe, the Irano-Turanian region, and North and South America. By 2050, further expansion in Europe is expected, likely due to climate change, particularly temperature changes (Bio1) and rain precipitation during the warmest quarter (Bio18). However, the species may see a range reduction in southern Europe due to lower precipitation and increased droughts related to climate change. Therefore, a northward shift in the range of the species is also predicted. In the context of global change, and especially biological invasions, this study highlights the risks of introducing aquaculture based on M. nipponense and recommends controlling such economic activities, which are associated with a high risk for native species and ecosystems. Further, long-term monitoring is needed to assess impacts and to efficiently manage M. nipponense populations that are already present in their non-native habitats, for mitigating their negative effects on native species and ecosystems worldwide.
Gallagher, K. M., and P. G. Albano. 2023. Range contractions, fragmentation, species extirpations, and extinctions of commercially valuable molluscs in the Mediterranean Sea—a climate warming hotspot R. Selden [ed.],. ICES Journal of Marine Science. https://doi.org/10.1093/icesjms/fsad065
Abstract The Mediterranean Sea is a global hotspot of climate warming and biodiversity loss where molluscs have provided valuable ecosystem services, such as provisioning and cultural value, since pre-historic times. A high rate of warming and range shift limitations due to the semi-enclosed nature of the basin raise concerns about molluscan population persistence in future climate scenarios. We modelled the future distribution of 13 Mediterranean species of molluscs subject to industrial fisheries exploitation on both the Mediterranean and Atlantic European coasts. We tested the hypothesis that range contractions, fragmentation, and species extirpations will become increasingly severe in the Mediterranean by modelling mid-century and end-century species distributions for four IPCC climate change scenarios. Already under mild emissions scenarios, substantial range contractions and fragmentation are projected in the Mediterranean, suggesting global extinctions by end-century for most endemic species. Colder deep waters do not act as refugia, contrary to expectations. Species also occurring along the Atlantic European coasts may benefit from warming through range expansions to higher latitudes or deeper waters. Most of the modeled species are already over-exploited, but their eradication from the Mediterranean will imply substantial financial losses and a profound cultural change in coastal communities.
Clemente, K. J. E., and M. S. Thomsen. 2023. High temperature frequently increases facilitation between aquatic foundation species: a global meta‐analysis of interaction experiments between angiosperms, seaweeds, and bivalves. Journal of Ecology. https://doi.org/10.1111/1365-2745.14101
Many studies have quantified ecological impacts of individual foundation species (FS). However, emerging data suggest that FS often co‐occur, potentially inhibiting or facilitating one another, thereby causing indirect, cascading effects on surrounding communities. Furthermore, global warming is accelerating, but little is known about how interactions between co‐occurring FS vary with temperature.Shallow aquatic sedimentary systems are often dominated by three types of FS: slower‐growing clonal angiosperms, faster‐growing solitary seaweeds, and shell‐forming filter‐ and deposit‐feeding bivalves. Here, we tested the impacts of one FS on another by analyzing manipulative interaction experiments from 148 papers with a global meta‐analysis.We calculated 1,942 (non‐independent) Hedges’ g effect sizes, from 11,652 extracted values over performance responses, such as abundances, growths or survival of FS, and their associated standard deviations and replication levels. Standard aggregation procedures generated 511 independent Hedges’ g that was classified into six types of reciprocal impacts between FS.We found that (i) seaweeds had consistent negative impacts on angiosperms across performance responses, organismal sizes, experimental approaches, and ecosystem types; (ii) angiosperms and bivalves generally had positive impacts on each other (e.g., positive effects of angiosperms on bivalves were consistent across organismal sizes and experimental approaches, but angiosperm effect on bivalve growth and bivalve effect on angiosperm abundance were not significant); (iii) bivalves positively affected seaweeds (particularly on growth responses); (iv) there were generally no net effects of seaweeds on bivalves (except for positive effect on growth) or angiosperms on seaweeds (except for positive effect on ‘other processes’); and (v) bivalve interactions with other FS were typically more positive at higher temperatures, but angiosperm‐seaweed interactions were not moderated by temperature.Synthesis: Despite variations in experimental and spatiotemporal conditions, the stronger positive interactions at higher temperatures suggest that facilitation, particularly involving bivalves, may become more important in a future warmer world. Importantly, addressing research gaps, such as the scarcity of FS interaction experiments from tropical and freshwater systems and for less studied species, as well as testing for density‐dependent effects, could better inform aquatic ecosystem conservation and restoration efforts and broaden our knowledge of FS interactions in the Anthropocene.
Chaudhary, C., J. M. Alfaro-Lucas, M. V. P. Simões, A. Brandt, and H. Saeedi. 2023. Potential geographic shifts in the coral reef ecosystem under climate change. Progress in Oceanography 213: 103001. https://doi.org/10.1016/j.pocean.2023.103001
The coral reefs are the most diverse marine ecosystem in the world. Considering its contribution as a natural resource for humanity and global biodiversity, it is critical to understand its response to climatic change. To date, no global predictions have been made about potential ecosystem changes in relation to its inhabiting species. Predicting changes in species' climatic suitability under increasing temperature and comparing them among species would be the first step in understanding the geographic and taxonomic coherence and discrepancies that may occur within the ecosystem. Using 57 species-specific global climate suitability models (of corals, molluscs, fish, crustaceans, and polychaetes) under present and future climate scenarios (RCP 4.5 and 8.5), we compared the potential coherence and differences and their cumulative impact on the ecosystem in warm, cold, shallow, and deep waters.Under the climatic scenarios, nearly 90% of 30 warm-water species were predicted to lose their suitability in the parts of the Indo-west Pacific, the Coast of Northern Australia, the South China Sea, the Caribbean Sea, and the Gulf of Mexico, resulting in the overall southward shift in their distributions. In contrast, a mixed response occurred in 27 cold-water species, with most northern temperate/boreal ones increasing their suitability in the Arctic Ocean and the Arctic species declining overall. We noticed that irrespective of their taxonomic group, the species with wider distribution ranges (thermal and geographic) had larger predicted gains in their suitability than their stenothermal counterparts, suggesting an increase of generalist species and a decline of specialist (endemic) species of the ecosystem under a warming climate.Our coherent projections of species' climatic suitability in warm and cold habitats of the tropics, temperate, boreal, and the Arctic, represent significant taxonomic groups of the ecosystem. This might indicate mass extinction risk (local– in the tropics and northern temperate regions, and overall– in the Arctic) in native habitats and a high species turnover across the ecosystem under a warming climate. This may also destabilise predator–prey dynamics in the ecosystem, especially if foraging specialists dominate coral food webs and adversely affect the associated countries. Our global projections highlight the regions of species’ potential loss and gain; stakeholders could use the information to protect biodiversity and maintain human well-being.
Hausdorf, B. 2023. Distribution patterns of established alien land snail species in the Western Palaearctic Region. NeoBiota 81: 1–32. https://doi.org/10.3897/neobiota.81.96360
AbstractEstablished alien land snail species that were introduced into the Western Palaearctic Region from other regions and their spread in the Western Palaearctic are reviewed. Thirteen of the 22 species came from North America, three from Sub-Saharan Africa, two from the Australian region, three probably from the Oriental Region and one from South America. The establishment of outdoor populations of these species was usually first seen at the western or southern rims of the Western Palearctic. Within Europe, the alien species usually spread from south to north and from west to east. The latitudinal ranges of the alien species significantly increased with increasing time since the first record of introduction to the Western Palearctic. The latitudinal mid-points of the Western Palaearctic and native ranges of the species are significantly correlated when one outlier is omitted. There is a general trend of poleward shifts of the ranges of the species in the Western Palaearctic compared to their native ranges. There are three reasons for these shifts: (1) the northward expansion of some species in Western Europe facilitated by the oceanic climate, (2) the impediment to the colonisation of southern latitudes in the Western Palaearctic due to their aridity and (3) the establishment of tropical species in the Mediterranean and the Middle East. Most of the species are small, not carnivorous and unlikely to cause serious ecological or economic damage. In contrast, the recently introduced large veronicellid slugs from Sub-Saharan Africa and the giant African snail Lissachatinafulica could cause economic damage in irrigated agricultural areas or greenhouses in the Mediterranean and the Middle East.
Kopperud, B. T., S. Lidgard, and L. H. Liow. 2022. Enhancing georeferenced biodiversity inventories: automated information extraction from literature records reveal the gaps. PeerJ 10: e13921. https://doi.org/10.7717/peerj.13921
We use natural language processing (NLP) to retrieve location data for cheilostome bryozoan species (text-mined occurrences (TMO)) in an automated procedure. We compare these results with data combined from two major public databases (DB): the Ocean Biodiversity Information System (OBIS), and the Global Biodiversity Information Facility (GBIF). Using DB and TMO data separately and in combination, we present latitudinal species richness curves using standard estimators (Chao2 and the Jackknife) and range-through approaches. Our combined DB and TMO species richness curves quantitatively document a bimodal global latitudinal diversity gradient for extant cheilostomes for the first time, with peaks in the temperate zones. A total of 79% of the georeferenced species we retrieved from TMO (N = 1,408) and DB (N = 4,549) are non-overlapping. Despite clear indications that global location data compiled for cheilostomes should be improved with concerted effort, our study supports the view that many marine latitudinal species richness patterns deviate from the canonical latitudinal diversity gradient (LDG). Moreover, combining online biodiversity databases with automated information retrieval from the published literature is a promising avenue for expanding taxon-location datasets.
Bosso, L., S. Smeraldo, D. Russo, M. L. Chiusano, G. Bertorelle, K. Johannesson, R. K. Butlin, et al. 2022. The rise and fall of an alien: why the successful colonizer Littorina saxatilis failed to invade the Mediterranean Sea. Biological Invasions. https://doi.org/10.1007/s10530-022-02838-y
Understanding what determines range expansion or extinction is crucial to predict the success of biological invaders. We tackled this long-standing question from an unparalleled perspective using the failed expansions in Littorina saxatilis and investigated its present and past habitat suitability in Europe through Ecological Niche Modelling. This intertidal snail is a typically successful Atlantic colonizer and the earliest confirmed alien species in the Mediterranean Sea, where, however, it failed to thrive despite its high dispersal ability and adaptability. We explored the environmental constraints affecting its biogeography, identified potential glacial refugia in Europe that fuelled its post-glacial colonisations and tested whether the current gaps in its distribution are linked to local ecological features. Our results suggested that L. saxatilis is unlikely to be a glacial relict in the Mediterranean basin. Multiple Atlantic glacial refugia occurred in the Last Glacial Maximum, and abiotic environmental features such as salinity and water temperature have influenced the past and current distributions of this snail and limited its invasion of the Mediterranean Sea. The snail showed a significant overlap in geographic space and ecological niche with Carcinus maenas , the Atlantic predator, but distinct from Pachygrapsus marmoratus , the Mediterranean predator, further pointing to Atlantic-like habitat requirements for this species. Abiotic constrains during introduction rather than dispersal abilities have shaped the past and current range of L. saxatilis and help explaining why some invasions have not been successful. Our findings contribute to clarifying the processes constraining or facilitating shifts in species’ distributions and biological invasions.
Strona, G., P. S. A. Beck, M. Cabeza, S. Fattorini, F. Guilhaumon, F. Micheli, S. Montano, et al. 2021. Ecological dependencies make remote reef fish communities most vulnerable to coral loss. Nature Communications 12. https://doi.org/10.1038/s41467-021-27440-z
Ecosystems face both local hazards, such as over-exploitation, and global hazards, such as climate change. Since the impact of local hazards attenuates with distance from humans, local extinction risk should decrease with remoteness, making faraway areas safe havens for biodiversity. However, isolat…