Science Enabled by Specimen Data

Khorasani, M., A. Naqinezhad, R. Neto, and G. Brundu. 2024. Tarenaya spinosa (Jacq.) Raf. (Cleomaceae): a new addition to the naturalized alien flora of Iran. BioInvasions Records 13: 881–889. https://doi.org/10.3391/bir.2024.13.4.04

We report the first record of Tarenaya spinosa (Jacq.) Raf. (spiny spider flower) as a new addition to the naturalized alien flora of Iran. Spiny spider flower is native to South and Central America and widely naturalized in the paleo-tropics (south Africa and Asia). This species was intentionally introduced to Iran in the last decade of the XX century and cultivated as an ornamental plant due to its large, peculiar, and colorful flowers. It escaped from cultivation and gradually increased its alien range in the surrounding areas, by seeds, without any direct human intervention. The UNESCOworld-heritage site Hyrcanian forests (northern Iran) includes a unique forest ecosystem which is potentially threatened by the naturalization of many alien and invasive species including this new recorded alien. Considering the potential negative impacts of this new alien species on the native biodiversity and its high reproductive potential and spread capacity, we highlight the importance of preventing new introductions, and prioritizing practices for eradication and control before it could become widespread and unmanageable.

Rouichi, S., M. E. Ghanem, and M. Amri. 2024. In‐situ and ex‐situ conservation priorities and distribution of lentil wild relatives under climate change: A modelling approach. Journal of Applied Ecology. https://doi.org/10.1111/1365-2664.14842

Abstract Lentil wild relatives are an important source of desirable traits that can be used for improving the productivity and resilience of cultivated lentil. Yet, our understanding of their habitat suitability and associated environmental factors remains limited. This study aimed to (i) assess climate change's impact on the potential distribution of six wild lentil species (Lens culinaris subsp. orientalis, L. culinaris subsp. tomentosus, L. culinaris subsp. odemensis, Lens ervoides, Lens lamotte and Lens nigricans) under various climate scenarios and (ii) assess their risk of extinction and determine their in‐situ and ex‐situ conservation status. We used a species distribution modelling approach with MaxEnt to assess the present and future potential distribution of wild lentil species. Extinction risk was evaluated based on International Union of Conservation of Nature criterion B, and the conservation status was assessed using the GapAnalysis method. The precipitation of the coldest quarter (bio19) and the minimum temperature of the coldest month (bio6) were found as the most important variables influencing the distribution of wild lentil species. Final Conservation Score (FCS) ranged from 17.85 and 37.55, highlighting three wild lentil species (L. ervoides, L. nigricans, and L. culinaris subsp. tomentosus) with high priority for conservation and medium priority for the remaining species. L. culinaris subsp. tomentosus is categorized as a vulnerable species, while the other five species are of least concern or near threatened. Synthesis and applications: This study underscores the urgent need for policy development to safeguard the diversity of lentil wild relatives in the face of climate change. The identified vulnerability of Lens culinaris subsp. tomentosus, among others, needs prompt and proactive conservation actions. Key management practices include the establishment and expansion of protected areas, habitat restoration, and the promotion of sustainable land use practices. The integration of effective in‐situ and ex‐situ conservation strategies, along with ecological management practices, is essential. These measures, not only, enhance biodiversity conservation but also improve the resilience of agricultural ecosystems. Such an approach is pivotal in shaping effective conservation management practices for lentil wild relatives, promoting a sustainable agricultural system and ensuring food security in an evolving climate scenario.

Hagelstam-Renshaw, C., J. J. Ringelberg, C. Sinou, W. Cardinal-McTeague, and A. Bruneau. 2024. Biome evolution in subfamily Cercidoideae (Leguminosae): a tropical arborescent clade with a relictual depauperate temperate lineage. Brazilian Journal of Botany 48. https://doi.org/10.1007/s40415-024-01058-z

Some plant lineages remain within the same biome over time (biome conservatism), whereas others seem to adapt more easily to new biomes. The c. 398 species (14 genera) of subfamily Cercidoideae (Leguminosae or Fabaceae) are found in many biomes around the world, particularly in the tropical regions of South America, Asia and Africa, and display a variety of growth forms (small trees, shrubs, lianas and herbaceous perennials). Species distribution maps derived from cleaned occurrence records were compiled and compared with existing biome maps and with the literature to assign species to biomes. Rainforest (144 species), succulent (44 species), savanna (36 species), and temperate (10 species) biomes were found to be important in describing the global distribution of Cercidoideae, with many species occurring in more than one biome. Two phylogenetically isolated species-poor temperate ( Cercis ) and succulent ( Adenolobus ) biome lineages are sister to two broadly distributed species-rich tropical clades. Ancestral state reconstructions on a time-calibrated phylogeny suggest biome shifts occurred throughout the evolutionary history of the subfamily, with shifts between the succulent and rainforest biomes, from the rainforest to savanna, from the succulent to savanna biome, and one early occurring shift into (or from) the temperate biome. Of the 26 inferred shifts in biome, three are closely associated with a shift from the ancestral tree/shrub growth form to a liana or herbaceous perennial habit. Only three of the 13 inferred transcontinental dispersal events are associated with biome shifts. Overall, we find that biome shifts tend to occur within the same continent and that dispersals to new continents tend to occur within the same biome, but that nonetheless the biome-conserved and biogeographically structured Cercidoideae have been able to adapt to different environments through time.

Streiff, S. J. R., E. O. Ravomanana, M. Rakotoarinivo, M. Pignal, E. P. Pimparé, R. H. J. Erkens, and T. L. P. Couvreur. 2024. High-quality herbarium-label transcription by citizen scientists improves taxonomic and spatial representation of the tropical plant family Annonaceae. Adansonia 46. https://doi.org/10.5252/adansonia2024v46a18

Herbarium specimens provide an important and central resource for biodiversity research. Making these records digitally available to end-users represents numerous challenges, in particular, transcribing metadata associated with specimen labels. In this study, we used the citizen science initiative ‘Les Herbonautes’ and the Récolnat network to transcribe specific data from all herbarium specimen labels stored at the Muséum national d’Histoire naturelle in Paris of the large tropical plant family Annonaceae. We compared this database with publicly available global biodiversity repository data and expert checklists. We investigated spatial and taxonomic advances in data availability at the global and country scales. A total of 20 738 specimens were transcribed over the course of more than two years contributing to and significantly extending the previously available specimen and species data for Annonaceae worldwide. We show that several regions, mainly in Africa and South East Asia not covered by online global datasets, are uniquely available in the P herbarium, probably linked to past history of the museum’s botanical exploration. While acknowledging the challenges faced during the transcription of historic specimens by citizen scientists, this study highlights the positive impact of adding records to global datasets both in space and time. This is illustrative for researchers, collection managers, policy makers as well as funders. These datasets will be valuable for numerous future studies in biodiversity research, including ecology, evolution, conservation and climate change science.

Ovcharova, N. V., M. M. Silantyeva, A. Vaganov, and A. A. Masanina. 2024. Invasion dynamics of Acer negundo L. in ribbon forests of the Altai Krai: ecological impacts and predictive habitat modeling. Altai State University. https://doi.org/10.5281/zenodo.14437657

This study examines the invasion dynamics of ash-leaved maple (box elder, Acer negundo L.) in the ribbon forests of Altai Krai, Russia, where it has become one of the dominant invasive species over the past thirty years. Originally introduced as an ornamental plant in the early 20th century, A. negundo has rapidly proliferated in lowland, steppe, and forest-steppe regions, significantly impacting local ecosystems. Our research analyzes the ecological and phytocoenotic conditions that facilitate A. negundo's invasion, focusing on its distribution across various ribbon pine forests in the region. Through geobotanical surveys and forest management record analysis, we reveal the species' prevalence in diverse forest types and its effects on biodiversity, tree growth, and community dynamics. Key findings indicate that A. negundo flourishes in disturbed habitats, where it aggressively competes with native flora, suppressing their growth and altering successional pathways. This leads to low-diversity communities increasingly dominated by the invasive species and highlights the exacerbating role of logging and land-use changes. Using predictive modeling techniques, we assessed habitat suitability for A. negundo across Eurasia, identifying temperature as the primary limiting factor for its distribution. The model achieved a high AUC value of 0.97, indicating strong reliability. These findings suggest a significant potential for A. negundo's range expansion throughout Altai Krai, especially in areas with reduced competition from native species. This research underscores the urgent need for effective management strategies to mitigate the effects of A. negundo in Altai Krai and similar regions.

MOLINO, S., G. SANTOS, R. VÁZQUEZ, R. MEDINA, and J. M. G. Y. GALÁN. 2024. Monograph of the genera Struthiopteris Scop. and Spicantopsis Nakai (Blechnaceae, Polypodiopsida). Phytotaxa 677: 1–48. https://doi.org/10.11646/phytotaxa.677.1.1

The Blechnaceae fern family, comprising approximately 250 species, exhibits a subcosmopolitan distribution but showcases notable diversity in South America and the Austropacific region. Recent taxonomic revisions expanded the generic treatment within the family, Resulting, among other things, in the resurrection of the genus Spicantopsis. This genus, segregated from Struthiopteris, now encompasses three species endemic to East Asia. Struthiopteris, on the other hand, has three species distributed in Japan, Europe, North of Africa, and western North America. Molecular evidence, coupled with morphoanatomical traits, supported this taxonomic distinction. Despite subsequent studies on palynological and morphoanatomical characteristics, a comprehensive global monograph of Struthiopteris and Spicantopsis is lacking. This paper aims to fill this gap by synthesizing available information, providing identification keys, full descriptions, taxonomic notes, and some necessary type designation for all species within both genera. The study, based on the examination of 1,649 herbarium specimens and digital materials, underscores the importance of anatomical and morphological characters in fern taxonomy. Mapping distribution data further enhances understanding of the geographic ranges of these ferns. This comprehensive synthesis contributes to the ongoing elucidation of fern diversity and taxonomy.

Zhang, L., I. van Riemsdijk, M. Liu, Z. Liao, A. Cavé‐Radet, J. Bi, S. Wang, et al. 2024. Biogeography of a Global Plant Invader: From the Evolutionary History to Future Distributions. Global Change Biology 30. https://doi.org/10.1111/gcb.17622

Biological invasions pose a global challenge, affecting ecosystems worldwide and human societies. Knowledge of the evolutionary history of invasive species is critical to understanding their current invasion success and projecting their future spread. However, to date, few studies have addressed the evolutionary history and potential future spread of invaders simultaneously. In this study, we explored both evolutionary history and spatiotemporal dynamic patterns of the distribution of Reynoutria japonica, known as one of the world's worst plant invaders. We analysed 265 R. japonica samples from its current geographical ranges across three continents, using seven chloroplast DNA (cpDNA) markers to establish the phylogenetic relationships among extant populations. We combined these with ecological niche modelling to infer historical and more recent migration patterns and predict potential future distribution changes under climate change. Our results indicate that climate fluctuations and sea level changes likely facilitated the expansion of R. japonica from southern Japan to continental East Asia in the Pliocene, followed by a contraction in East Asian populations. In the recent Holocene, human activities have then enabled a linage of this species to spread from Japan to Europe and North America, resulting in three major global clades. Future climate scenarios suggest a northward expansion of R. japonica in Europe and North America, but shrinking habitat in China. Our study, thus, demonstrates the complex influences of historical climate‐driven migrations, human activities and future climate changes on the global distribution of an invasive species.

Zhao, J., Z.-L. Liang, S.-L. Fang, R.-J. Li, C.-J. Huang, L.-B. Zhang, T. Robison, et al. 2025. Phylogenomics of Paragymnopteris (Cheilanthoideae, Pteridaceae): Insights from plastome, mitochondrial, and nuclear datasets. Molecular Phylogenetics and Evolution 204: 108253. https://doi.org/10.1016/j.ympev.2024.108253

Previous studies have shown that at least six genera of the Cheilanthoideae, a subfamily of the fern family Pteridaceae, may not be monophyletic. In these non-monophyletic genera, the Old-World genus Paragymnopteris including approximately five species have long been controversial. In this study, with an extensive taxon sampling of Paragymnopteris, we assembled 19 complete plastomes of all recognized Paragymnopteris species, plastomes of Pellaea (3 species) and Argyrochosma (1 species), as well as transcriptomes from Paragymnopteris (6 species) and Argyrochosma (1 species). We conducted a comprehensive and systematic phylogenomic analysis focusing on the contentious relationships among the genus of Paragymnopteris through 9 plastid makers, the plastomes, mitochondria, nuclear ribosomal cistron genomes, and single-copy nuclear genes. Moreover, we further combined distribution, ploidy, and morphological features to investigate the evolution of Paragymnopteris. The backbone of Paragymnopteris was resolved consistently in the nuclear and plastid phylogenies. Our major results include: (1) Paragymnopteris is not monophyletic including two fully supported clades; (2) confirming that Paragymnopteris delavayi var. intermedia is a close relative of P. delavayi instead of P. marantae var. marantae; (3) the chromosome base number may not be a stable trait which has previously been used as an important character to divide Paragymnopteris into two groups; and (4) gene flow or introgression might be the main reason for the gene trees conflict of Paragymnopteris, but both gene flow and ILS might simultaneously and/or cumulatively act on the conflict of core pellaeids. The robust phylogeny of Paragymnopteris presented here will help us for the future studies of the arid to semi-arid ferns of Cheilanthoideae at the evolutionary, physiological, developmental, and omics-based levels.

Yang, M., Y. Qi, X. Xian, N. Yang, L. Xue, C. Zhang, H. Bao, and W. Liu. 2025. Coupling phylogenetic relatedness and distribution patterns provides insights into sandburs invasion risk assessment. Science of The Total Environment 958: 177819. https://doi.org/10.1016/j.scitotenv.2024.177819

Invasive sandburs (Cenchrus spp.), tropical and subtropical plants, are preferred in grasslands and agricultural ecosystems worldwide, causing significant crop production losses and reducing native biodiversity. Integrating phylogenetic relatedness and potentially suitable habitats (PSHs) to identify areas at risk of invasion is critical for prioritizing management efforts and supporting decisions on early warning and surveillance for sandbur invasions. However, despite risk assessments for individual Cenchrus species, the combined analysis of suitable habitats and phylogenetic relationships remains unclear. Therefore, this study aims to assess the invasion risk regions—including PSHs, species richness (SR), and phylogenetic structure—of eight invasive and potentially invasive sandburs in China, to quantify their niche overlap and identify driving factors. Our results showed that the phylogenetic distance of potentially invasive sandburs was closely related to invasive sandburs. Especially, three potentially invasive sandburs, C. ciliaris, C. setigerus, and C. myosuroides, possessed invasion potential resulting from close phylogenetic relatedness and high climatic suitability compared with invasive sandburs. The PSHs for invasive sandburs were distributed in wider regions except northwest China and had higher suitability to different environmental conditions. Potentially invasive sandburs were primarily located in southwestern and southern China driven by precipitation, especially, being inspected in Guangdong, Hainan, and Yunnan on numerous occasions, or potentially introduced in Guangxi, Taiwan, and Fujian for sandburs invasion hotspots. The phylogenetic clustering for eight sandburs occurred in the eastern, center, and southern coastal China, where higher SR in distribution was correlated with invasion hotspots. The SR and phylogenetic relatedness metrics were related to temperature and topographic variables. Totally, the expansion and invasion risk could be increased toward higher latitudes under future global warming. These findings offer novel insights for the prevention and management of sandburs invasions.

Kessous, I. M., H. Farooq, W. Testo, M. F. T. Jiménez, B. Neves, A. R. Pinto, F. Salgueiro, et al. 2024. New insights into the classification, diversification, and evolutionary dynamics of bromeliads. Botanical Journal of the Linnean Society. https://doi.org/10.1093/botlinnean/boae074

Abstract The Neotropics have been host to a myriad of geological and climatic events that have shaped the biodiversity present in the region. Bromeliaceae forms one of the most prominent components of the Neotropical flora, being considered the largest group nearly exclusive to the Americas, with almost 4000 species divided into eight subfamilies. Here, we utilize a new time-calibrated molecular phylogeny including 1268 bromeliad taxa and integrate habitat and morphological data to answer the following questions: (i) Are bromeliad subfamilies monophyletic, and did Neogene and Quaternary events in South America coincide with their divergence? (ii) Did naked seeds of berry-fruited species, epiphytic growth, and climatic factors increase bromeliad diversification? Our analysis reconstructed a new topology concerning some recently diverged lineages, with the genus Bromelia emerging as the sister group of a clade including all remaining Bromelioideae lineages + Puyoideae. Miocene events possibly triggered the diversification of bromeliads after a long period of stasis during the Palaeogene. We hypothesize that the morphological shift between Bromelia and Bromelioideae (except Bromelia) is related to the colonization of a new high-elevation environment by Puyoideae in the Andes. Additionally, our results show that naked seeds and the epiphytic growth form positively influence diversification rate, while precipitation, temperature, and elevation have a negative influence. We emphasize the importance of considering a variety of morphological and ecological features to enhance our understanding of bromeliad evolution.