Science Enabled by Specimen Data
Guerrero, P. C., T. Contador, A. Díaz, C. Escobar, J. Orlando, C. Marín, and P. Medina. 2025. Southern Islands Vascular Flora (SIVFLORA) dataset: A global plant database from Southern Ocean islands. Scientific Data 12. https://doi.org/10.1038/s41597-025-04702-9
The Southern Islands Vascular Flora (SIVFLORA) dataset is a globally significant, open-access resource that compiles essential biodiversity data on vascular plants from islands across the Southern Ocean. The SIVFLORA dataset was generated through five steps: study area delimitation, compiling the dataset, validating and harmonizing taxonomy, structuring dataset attributes, and establishing file format and open access. Covering major taxonomic divisions, SIVFLORA offers a comprehensive overview of plant occurrences, comprising 14,589 records representing 886 species, 95 families, and 42 orders. This dataset documents that 58.62% of the taxa are native, 9.61% are endemic, and 31.77% are alien species. The Falkland/Malvinas Archipelago, the most species-rich, contrast sharply with less diverse islands like the South Orkney Archipelago. SIVFLORA serves as a taxonomically harmonized, interoperable resource for investigating plant diversity patterns, ecosystem responses to climate change in extreme environments, island biogeography, endemism, and the effects of anthropogenic pressures on Southern Ocean flora.
Brock, J. M. R., A. M. Bellvé, and B. R. Burns. 2025. Marcescence and prostrate growth in tree ferns are adaptations to cold tolerance. Ecography. https://doi.org/10.1111/ecog.07362
Cold tolerance strategies in plants vary from structural to biochemical permitting many plants to survive and grow on sites that experience freezing conditions intermittently. Although tree ferns occur predominantly across the tropics, they also occur in temperate zones and occasionally in areas that experience sub‐zero temperatures, and how these large ferns survive freezing conditions is unknown. Many temperate tree fern taxa are marcescent – retaining whorls of dead fronds encircling the upper trunk – or develop short or prostrate trunks, possibly to insulate against frost damage to their trunks and growing crowns. We asked the following questions: 1) do global growth patterns and traits of tree ferns respond to freezing conditions associated with latitude and elevation, 2) do growth patterns of tree ferns in New Zealand vary along a temperature‐related gradient, and 3) do marcescent tree fern skirts insulate the growing crown from sub‐zero temperatures? To establish what morphological adaptations permitted the Cyatheales to occur in biomes that experience intermittent sub‐zero temperatures and frost, we 1) reviewed the global distributions of these structural and morphological traits within the tree ferns (Cyatheales); 2) assessed the patterns of tree fern marcescence, and other traits potentially associated with cold tolerance (no trunk, prostrate, short‐trunked) of nine taxa of the Cyatheales along environmental gradients across New Zealand; and 3) conducted a field experiment to assess the thermal insulation properties of tree fern marcescent skirts. We identified significant trends among growth forms, marcescence, and environmental gradients consistent with our hypothesis that these are adaptations to tolerate cold. Our field experiments provide quantitative evidence that marcescent skirts have a strong insulating effect on tree fern trunks. The Cyatheales have evolved several strategies to protect the pith cores of their trunks from extreme cold temperatures in temperate forests allowing them to capture niche space in environments beyond the tropics.
Chukwuma, E. C., and L. T. Mankga. 2025. A MaxEnt model for estimating suitable habitats for some important Pelargonium species in South Africa. Journal for Nature Conservation 84: 126845. https://doi.org/10.1016/j.jnc.2025.126845
Accessing the rich biodiversity in tropical ecosystems has been of great interest to scientists across the globe. While several species have been underutilized despite their wide distribution, many others are faced with continuous population decline across their native range. Here, we amassed occurrence data and environmental variables to estimate the spatial distribution and habitat suitability of six important Pelargonium species whose conservation status in South Africa has been of concern. These were combined and used to project the future habitats under 2 Global Climate Models (GCMs) and 2 Scenarios (RCP 4.5 & 8.5). We overlayed our area maps and conducted a gap analysis to identify priority areas for the conservation of our focal species. Results showed a distribution pattern driven by temperature and precipitation, and unstable suitable areas by the years 2050 and 2070. Five temperature and precipitation variables (Bio2, Bio4, Bio12, Bio14, and Bio18) were identified as primary contributors to the habitat suitability of the selected Pelargonium species. Our model evaluation demonstrated a strong performance, with an AUC score >0.8, providing robust support for its replicability in monitoring the spatial distribution of other related taxa. We identified key areas for conservation activities in a bid to expand the current known habitats of the species in focus. While we leveraged SDM approach for explaining the area of occupancy and the spatial extent of Pelargonium species across in South Africa, we posit that attention should be drawn to the preservation of the remaining populations of the species and their associated habitats, towards mitigating their extinction.
Crespo, D., S. Leston, L. D. Rato, A. B. Moutinho, F. Martinho, S. C. Novais, M. A. Pardal, and M. F. L. Lemos. 2024. The effects of different densities of Asparagopsis armata (Harvey, 1855) seaweed on the clam Ruditapes philippinarum (A. Adams and Reeve, 1850): Insights from a laboratory assessment. Marine Environmental Research 202: 106812. https://doi.org/10.1016/j.marenvres.2024.106812
Several invasive species can occupy the same geographic area. Interaction between species depends on several factors, and the results of such interactions can be highly diverse. Asparagopsis armata is a invasive red seaweed whose exudates contain a cocktail of toxic halogenated compounds. In this study, the impact of high and low levels of A. armata on the bivalve Ruditapes philippinarum was assessed in a laboratory experiment. Both are prominent invasive species in Europe and could share the same habitats. The effects of the algae were measured at different biological levels, framed by an integrated approach: bioturbation as a proxy for organismal activity and behaviour within the sediment, and several subcellular biomarkers related to oxidative stress and damage, energy metabolism, detoxification, and neurotransmission. While bioturbation revealed the effects of exudates on the bivalve, with a decrease in most parameters when exposed to the different amounts of algae, only marginal responses were found for biomarkers, suggesting a possible temporal decoupling between the behavioural response and the intrinsic biochemical environment. These results denote that despite the recognized potential of biomarkers to address a myriad of situations, a proxy for higher levels of biological organization, such as behaviour, for its integration of lower-level effects, is a robust tool to address complex and lesser-known mixtures of stressors.
Nuñez Otaño, N. B., E. V. Pérez-Pincheira, V. Coll Moritan, and M. Llorens. 2024. Maastrichtian palaeoenvironments and palaeoclimate reconstruction in southern South America (Patagonia, Argentina) based on fossil fungi and algae using open data resources. Historical Biology: 1–15. https://doi.org/10.1080/08912963.2024.2408804
The use of non-pollen palynomorphs (NPP), particularly fossil fungi and algae, as palaeobiological proxies for Late Cretaceous palaeoenvironmental and palaeoclimatic reconstructions of warm-to-hot greenhouse conditions, can enhance our understanding of climate change impacts on modern Patagonian environments. This study aimed to reconstruct the Maastrichtian palaeoenvironment and palaeoclimate in the Cañadón Asfalto Basin (CAB, Chubut Province) by testing these NPPs as proxies using the Nearest Living Relative method (NLR). Moreover, using modern ecological requirements from open-source databases, such as GBIF and processing it with an open-source, cross-platform tool like QGIS, linked with Köppen-Geiger shapefiles, provided evidence of climate-driven palaeo-distribution patterns of fungal and algal diversity at CAB. Applying modern ecological requirements and biogeographic distribution data, we reconstructed the palaeoclimate as temperate with evenly distributed precipitation and warm summers, corresponding to the Cfb climate zone in Köppen-Geiger classifications. Additionally, our methodology produced reliable results regarding Cenozoic floras’ physiognomies based on fossil fungi, revealing a transition from sparsely wooded areas with palms and prairies to complex forest ecosystems with palms, deciduous trees, and shrubland. Furthermore, testing Cretaceous algae with the NLR method, for the first time, provided comprehensive insights into past water body characteristics, including trophic state and water quality.
Howard, C. C., P. Kamau, H. Väre, L. Hannula, A. Juslén, J. Rikkinen, and E. B. Sessa. 2024. Historical Biogeography of Sub‐Saharan African Spleenworts. Journal of Biogeography. https://doi.org/10.1111/jbi.15019
ABSTRACTAimFerns are globally distributed, yet the number of studies examining the historical evolution of African taxa is relatively low. Investigation of the evolution of African fern diversity is critical in order to understand patterns and processes that have global relevance (e.g., the pantropical diversity disparity [PDD] pattern). This study aims to examine when and from where a globally distributed fern lineage arrived in sub‐Saharan Africa, to obtain a better understanding of potential processes contributing to patterns of diversity across the region.LocationGlobal, sub‐Saharan Africa.TaxonAsplenium (Aspleniaceae).MethodsWe analysed five loci from 537 Asplenium taxa using a maximum likelihood (IQ‐Tree) phylogenetic framework. For age estimation, we performed penalised likelihood as implemented in treePL, and executed a Bayesian analysis using BEAST. Biogeographical analyses were carried out using BioGeoBEARS.ResultsMost dispersals into Africa occurred within the last ~55 myr, with the highest diversity of sub‐Saharan African taxa concentrated in two clades, each of which descended from an Asian ancestor. Additional dispersals to sub‐Saharan Africa can be found throughout the phylogeny. Lastly, potential cryptic species diversity exists within Asplenium as evidenced by several polyphyletic taxa.Main ConclusionsWe recover multiple dispersals of Asplenium to sub‐Saharan Africa, with two major lineages likely diversifying after arrival.
Lin, P.-C., T.-Y. Chiang, M.-L. Chen, T.-W. Hsu, P.-W. Gean, S.-T. Cheng, and Y.-H. Hsu. 2024. Global prospects for cultivating Centella asiatica: An ecological niche modeling approach under current and future climatic scenarios. Journal of Agriculture and Food Research 18: 101380. https://doi.org/10.1016/j.jafr.2024.101380
Centella asiatica is a medicinal plant recognized for its various benefits contributed by its metabolites and has been used as a food supplement since prehistorical times across various cultures. Due to the reliance on natural populations of C. asiatica and the impacts of environmental factors on its yield and centelloside production, there is a need to identify suitable cultivation areas for this species. We employed ecological niche modelling with bioclimatic and soil variables to evaluate the suitability of cultivation under current and future climatic scenarios. Our results identified suitable areas for cultivating C. asiatica worldwide, indicating its potential for global commercial cultivation. However, the niche reconstruction of highly concentrated centelloside was restricted to South and Southeast Asia due to the lack of available data. When we projected the modelled niche of centelloside in these regions, we observed a lower occurrence probability in some areas, suggesting potential challenges in cost-effectiveness. Nevertheless, our results suggest a consistent future distribution for this species when we projected the modelled niche under future climates based on various socio-economic scenarios. This study not only identifies suitable areas to develop commercial cultivation for C. asiatica with highly concentrated centelloside, but also provides supporting evidence of the consistency of these areas, which can increase its sustainability.
Mu, J., Z. Li, Q. Lu, H. Yu, C. Hu, Y. Mu, and J. Qu. 2024. Overlooked drivers of the greenhouse effect: The nutrient-methane nexus mediated by submerged macrophytes. Water Research 266: 122316. https://doi.org/10.1016/j.watres.2024.122316
Submerged macrophytes remediation is a commonly used technique for improving water quality and restoring habitat in aquatic ecosystems. However, the drivers of success in the submerged macrophytes assembly process and their specific impacts on methane emissions are poorly understood. Thus, we conducted a mesocosm experiment to test the growth plasticity and carbon fixation of widespread submerged macrophytes (Vallisneria natans) under different nutrient conditions. A refined dynamic chamber method was utilized to concurrently collect and quantify methane emission fluxes arising from ebullition and diffusion processes. Significant correlations were found between methane flux and variations in the physiological activities of V. nantas by the fluorescence imaging system. Our results show that exceeding tolerance thresholds of ammonia in the water significantly interfered with the photosynthetic systems in submerged leaves and the radial oxygen loss in adventitious roots. The recovery process of V. natans accelerated the consumption of dissolved oxygen, leading to increase in the populations of methanogen (153.3 % increase of mcrA genes) and subsequently elevating CH4 emission fluxes (23.7 %) under high nutrient concentrations. Conversely, V. natans increased the available organic carbon under low nutrient conditions by radial oxygen loss, further increasing CH4 emission fluxes (94.7 %). Quantitative genetic and modeling analyses revealed that plant restoration processes drive ecological niche differentiation of methanogenic and methane oxidation microorganisms, affecting methane release fluxes within the restored area. The speciation process of V. natans is incapable of simultaneously meeting improved water purification and reduced methane emissions goals.
Hodgson, R. J., C. Liddicoat, C. Cando-Dumancela, N. W. Fickling, S. D. Peddle, S. Ramesh, and M. F. Breed. 2024. Increasing aridity strengthens the core bacterial rhizosphere associations in the pan-palaeotropical C4 grass, Themeda triandra. Applied Soil Ecology 201: 105514. https://doi.org/10.1016/j.apsoil.2024.105514
Understanding belowground plant-microbial interactions is fundamental to predicting how plant species respond to climate change, particularly in global drylands. However, these interactions are poorly understood, especially for keystone grass species like the pan-palaeotropical Themeda triandra. Here, we used 16S rRNA amplicon sequencing to characterise microbiota in rhizospheres and bulk soils associated with T. triandra. We applied this method to eight native sites across a 3-fold aridity gradient (aridity index range = 0.318 to 0.903 = 87 % global aridity distribution) in southern Australia. By examining the relative contributions of climatic, edaphic, ecological, and host specific phenotypic traits, we identified the ecological drivers of core T. triandra-associated microbiota. We show that aridity had the strongest effect on shaping these core microbiotas, and report that a greater proportion of bacterial taxa that were from the core rhizosphere microbiomes were also differentially abundant in more arid T. triandra regions. These results suggest that T. triandra naturally growing in soils under more arid conditions have greater reliance on rhizosphere core taxa than plants growing under wetter conditions. Our study underscores the likely importance of targeted recruitment of bacteria into the rhizosphere by grassland keystone species, such as T. triandra, when growing in arid conditions. This bacterial soil recruitment is expected to become even more important under climate change.
Minghetti, E., P. M. Dellapé, and S. I. Montemayor. 2024. Orsillus depressus (Heteroptera: Lygaeidae), an invasive circum-mediterranean species recently reported from America. Are the endemic and already endangered Cupressaceae trees from the Andean Region facing a new challenge? Biological Invasions. https://doi.org/10.1007/s10530-024-03313-6
Orsillus depressus , a circum-mediterranean species of seed bug that lives on several genera and species of Cupressaceae is considered a pest of these trees, has recently been recorded for the first time in America, in Argentina. As the western records of O. depressus are close to endemic Cupressaceae forests from the Andean Region, our attention is drawn to the possible risk of colonization and establishment of O. depressus on these forests, where three endemic monotipic genera are found: Austrocedrus chilensis , Fitzroya cupressoides and Pilgerodendron uviferum . Maxent Models for present and future scenarios, and Minimum Volume Ellipsoids were used, and natural pathways were explored. Orsillus depressus has shown a high adaptive capacity to environments with different climates, and considering the models predictions, there are large suitable areas for its establishment in southern Argentina and Chile. Also, the climatic space O. depressus occupies is small and in part new, and an expansion should be expected. Moreover, multiple natural pathways were recognized that would allow its ingression in areas highly suitable with endemic Cupressaceae forests.