Science Enabled by Specimen Data

Sánchez‐Campaña, C., C. Múrria, V. Hermoso, D. Sánchez‐Fernández, J. M. Tierno de Figueroa, M. González, A. Millán, et al. 2023. Anticipating where are unknown aquatic insects in Europe to improve biodiversity conservation. Diversity and Distributions. https://doi.org/10.1111/ddi.13714

Aim Understanding biodiversity patterns is crucial for prioritizing future conservation efforts and reducing the current rates of biodiversity loss. However, a large proportion of species remain undescribed (i.e. unknown biodiversity), hindering our ability to conduct this task. This phenomenon, known as the ‘Linnean shortfall’, is especially relevant in highly diverse, yet endangered, taxonomic groups, such as insects. Here we explore the distributions of recently described freshwater insect species in Europe to (1) infer the potential location of unknown biodiversity hotspots and (2) determine the variables that can anticipate the distribution of unknown biodiversity. Location The European continent, including western Russia, Cyprus and Turkey. Methods Georeferenced information of all sites where new aquatic insect species were described across Europe from 2000 to 2020 was compiled. In order to understand the observed spatial patterns in richness of recently described species, spatial units were defined (level 6 of HydroBASINS) and associated with a combination of a set of socioeconomic, environmental and sampling effort descriptors. A zero-inflated Poisson regression approach was used to model the richness of newly described species within each spatial unit. Results Nine hundred and sixty-six recently described species were found: 398 Diptera, 362 Trichoptera, 105 Coleoptera, 66 Plecoptera, 28 Ephemeroptera, 3 Neuroptera, 2 Lepidoptera and 2 Odonata. The Mediterranean Basin was the region with the highest number of recently described species (74%). The richness of recently described species per spatial unit across Europe was highest at mid-elevation areas (between 400 and 1000 m), latitudes between 40 and 50° and in areas with yearly average precipitation levels of 500–1000 mm, a medium intensity of sampling effort and low population density. The percentage of protected areas in each study unit was not significantly related to the richness of recently described species. In fact, 70% of the species were found outside protected areas. Main conclusions The results highlight the urgent need to concentrate conservation efforts in freshwater ecosystems located at mid-altitude areas and out of protected areas across the Mediterranean Basin. The highest number of newly described species in those areas indicates that further monitoring efforts are required to ensure the aquatic biodiversity is adequately known and managed within a context of growing human impacts in freshwater ecosystems.

Huang, T., J. Chen, K. E. Hummer, L. A. Alice, W. Wang, Y. He, S. Yu, et al. 2023. Phylogeny of Rubus (Rosaceae): Integrating molecular and morphological evidence into an infrageneric revision. TAXON. https://doi.org/10.1002/tax.12885

Rubus (Rosaceae), one of the most complicated angiosperm genera, contains about 863 species, and is notorious for its taxonomic difficulty. The most recent (1910–1914) global taxonomic treatment of the genus was conducted by Focke, who defined 12 subgenera. Phylogenetic results over the past 25 years suggest that Focke's subdivisions of Rubus are not monophyletic, and large‐scale taxonomic revisions are necessary. Our objective was to provide a comprehensive phylogenetic analysis of the genus based on an integrative evidence approach. Morphological characters, obtained from our own investigation of living plants and examination of herbarium specimens are combined with chloroplast genomic data. Our dataset comprised 196 accessions representing 145 Rubus species (including cultivars and hybrids) and all of Focke's subgenera, including 60 endemic Chinese species. Maximum likelihood analyses inferred phylogenetic relationships. Our analyses concur with previous molecular studies, but with modifications. Our data strongly support the reclassification of several subgenera within Rubus. Our molecular analyses agree with others that only R. subg. Anoplobatus forms a monophyletic group. Other subgenera are para‐ or polyphyletic. We suggest a revised subgeneric framework to accommodate monophyletic groups. Character evolution is reconstructed, and diagnostic morphological characters for different clades are identified and discussed. Based on morphological and molecular evidence, we propose a new classification system with 10 subgenera: R. subg. Anoplobatus, R. subg. Batothamnus, R. subg. Chamaerubus, R. subg. Cylactis, R. subg. Dalibarda, R. subg. Idaeobatus, R. subg. Lineati, R. subg. Malachobatus, R. subg. Melanobatus, and R. subg. Rubus. The revised infrageneric nomenclature inferred from our analyses is provided along with synonymy and type citations. Our new taxonomic backbone is the first systematic and complete global revision of Rubus since Focke's treatment. It offers new insights into deep phylogenetic relationships of Rubus and has important theoretical and practical significance for the development and utilization of these important agronomic crops.

MANCINI, F., A. O. LILLO, R. BARDELLI, S. VIZZINI, and G. MANCINELLI. 2022. Variation in the stable isotope trophic position of the bluefish Pomatomus saltatrix (Linnaeus, 1766) from two Mediterranean sites: insights from a global meta-analysis. Mediterranean Marine Science 23: 850–863. https://doi.org/10.12681/mms.29325

A direct consequence of sea warming is the shift in the distribution range of thermo-tolerant species that have the potential to determine novel inter-specific interactions, ultimately altering food web structures and ecosystem processes. In this study, we investigated the trophic position of the bluefish Pomatomus saltatrix (Linnaeus, 1766), a pelagic predator that has recently expanded its distribution in the Mediterranean basin and for which scant information is available on its functional role in recently-colonised areas. Nitrogen and carbon stable isotopes were determined in muscle tissues of bluefish specimens collected in south-east Italy in the Gulf of Taranto (NW Ionian Sea) and in the Strait of Otranto (SW Adriatic Sea) at two coastal sites showing contrasting oceanographic conditions. The bluefish trophic position (TP) was estimated using locally abundant forage fish species as isotopic baselines. The results indicated for bluefish from the Strait of Otranto a TP value of 5.1, significantly higher than that determined in the Gulf of Taranto (4.2), and exceeding stomach content-based estimations reported by the online database FishBase and by literature sources. A synthesis of 30 publications reporting isotopic data for the bluefish and its potential prey at a global scale indicated that the species’ trophic position varied considerably between 2.7 and 5.2. The observed variability depended on location and on the baseline species used in the estimations. Yet, a significant difference in trophic position was observed for bluefish from transitional and inshore environments as compared with offshore areas, mirroring the results obtained from the Gulf of Taranto and the Strait of Otranto. The findings of the study highlight the high trophic plasticity characterizing the bluefish in recently colonized areas, suggesting that it may play a key role in facilitating the expansion of its distribution range. However, additional investigations are essential to provide an advanced resolution of the bluefish functional role in Mediterranean coastal food webs.

Ramírez, F., V. Sbragaglia, K. Soacha, M. Coll, and J. Piera. 2022. Challenges for Marine Ecological Assessments: Completeness of Findable, Accessible, Interoperable, and Reusable Biodiversity Data in European Seas. Frontiers in Marine Science 8. https://doi.org/10.3389/fmars.2021.802235

The ongoing contemporary biodiversity crisis may result in much of ocean’s biodiversity to be lost or deeply modified without even being known. As the climate and anthropogenic-related impacts on marine systems accelerate, biodiversity knowledge integration is urgently required to evaluate and monit…

Xue, T., S. R. Gadagkar, T. P. Albright, X. Yang, J. Li, C. Xia, J. Wu, and S. Yu. 2021. Prioritizing conservation of biodiversity in an alpine region: Distribution pattern and conservation status of seed plants in the Qinghai-Tibetan Plateau. Global Ecology and Conservation 32: e01885. https://doi.org/10.1016/j.gecco.2021.e01885

The Qinghai-Tibetan Plateau (QTP) harbors abundant and diverse plant life owing to its high habitat heterogeneity. However, the distribution pattern of biodiversity hotspots and their conservation status remain unclear. Based on 148,283 high-resolution occurrence coordinates of 13,450 seed plants, w…

Thanou, E., V. Kypraios-Skrekas, P. Kornilios, and S. Giokas. 2021. Ecomorphological divergence and lack of gene flow in two sympatric Balkan slow worms (Squamata: Anguidae). Biological Journal of the Linnean Society 134: 443–460. https://doi.org/10.1093/biolinnean/blab074

The slow-worm lizards of the genus Anguis show significant morphological, behavioural and ecological uniformity owing to their limbless, elongated bodies and semifossorial lifestyle. This makes the delimitation of species challenging. Five monophyletic, deeply divergent and mostly parapatric mitocho…

Bazzicalupo, A. L., J. Whitton, and M. L. Berbee. 2019. Over the hills, but how far away? Estimates of mushroom geographic range extents. Journal of Biogeography. https://doi.org/10.1111/jbi.13617

Aim: Geographic distributions of mushroom species remain poorly understood despite their importance for advancing our understanding of the habitat requirements, species interactions and ecosystem functions of this key group of organisms. Here, we estimate geographic range extents (maximum within‐spe…

Li, X., B. Li, G. Wang, X. Zhan, and M. Holyoak. 2020. Deeply digging the interaction effect in multiple linear regressions using a fractional-power interaction term. MethodsX 7: 101067. https://doi.org/10.1016/j.mex.2020.101067

In multiple regression Y ~ β0 + β1X1 + β2X2 + β3X1 X2 + ɛ., the interaction term is quantified as the product of X1 and X2. We developed fractional-power interaction regression (FPIR), using βX1M X2N as the interaction term. The rationale of FPIR is that the slopes of Y-X1 regression along the X2 gr…