Science Enabled by Specimen Data

Reichgelt, T. 2024. Linking the macroclimatic niche of native lithophytic ferns and their prevalence in urban environments. American Journal of Botany 111. https://doi.org/10.1002/ajb2.16364

Premise Vertical surfaces in urban environments represent a potential expansion of niche space for lithophytic fern species. There are, however, few records of differential success rates of fern species in urban environments.MethodsThe occurrence rates of 16 lithophytic fern species native to the northeastern USA in 14 biomes, including four urban environments differentiated by percentage of impervious surfaces, were evaluated. In addition, the natural macroclimatic ranges of these species were analyzed to test whether significant differences existed in climatic tolerance between species that occur in urban environments and species that do not.ResultsThree species appear to preferentially occur in urban environments, two species may facultatively occur in urban environments, and the remaining 11 species preferentially occur in nondeveloped rural environments. The natural range of fern species that occur in urban environments had higher summer temperatures than the range of species that do not, whereas other macroclimatic variables, notably winter temperatures and precipitation, were less important or insignificant.ConclusionsVertical surfaces in urban environments may represent novel niche space for some native lithophytic fern species in northeastern USA. However, success in this environment depends, in part, on tolerance of the urban heat island effect, especially heating of impervious surfaces in summer.

Gan, Z., X. Fang, C. Yin, Y. Tian, L. Zhang, X. Zhong, G. Jiang, and A. Tao. 2024. Extraction, purification, structural characterization, and bioactivities of the genus Rhodiola L. polysaccharides: A review. International Journal of Biological Macromolecules 276: 133614. https://doi.org/10.1016/j.ijbiomac.2024.133614

The genus Rhodiola L., an integral part of traditional Chinese medicine and Tibetan medicine in China, exhibits a broad spectrum of applications. This genus contains key compounds such as ginsenosides, polysaccharides, and flavonoids, which possess anti-inflammatory, antioxidant, hypoglycaemic, immune-enhancing, and anti-hypoxic properties. As a vital raw material, Rhodiola L. contributes to twenty-four kinds of Chinese patent medicines and 481 health food products in China, finding extensive application in the health food sector. Recently, polysaccharides have emerged as a focal point in natural product research, with applications spanning the medicine, food, and materials sectors. Despite this, a comprehensive and systematic review of polysaccharides from the genus Rhodiola L. polysaccharides (TGRPs) is warranted. This study undertakes a systematic review of both domestic and international literature, assessing the research advancements and chemical functional values of polysaccharides derived from Rhodiola rosea. It involves the isolation, purification, and identification of a variety of homogeneous polysaccharides, followed by a detailed analysis of their chemical structures, pharmacological activities, and molecular mechanisms, structure-activity relationship (SAR) of TGRPs. The discussion includes the influence of molecular weight, monosaccharide composition, and glycosidic bonds on their biological activities, such as sulfation and carboxymethylation et al. Such analyses are crucial for deepening the understanding of Rhodiola rosea and for fostering the development and exploitation of TGRPs, offering a reference point for further investigations into TGRPs and their resource utilization.

López-Pérez, J. D., S. Zamudio, G. Munguía-Lino, and A. Rodríguez. 2024. Una especie endémica nueva y distribución de la riqueza de especies del género <i>Pinguicula</i> (Lentibulariaceae) en la Faja Volcánica Trans-Mexicana, México. Botanical Sciences 102: 995–1008. https://doi.org/10.17129/botsci.3485

Background: The genus Pinguicula harbors 110 species, of which 53 are distributed in Mexico. The formation of the Mexican mountains has favored the Pinguicula diversification. Pinguicula specimens collected in the State of México, along the Trans-Mexican Volcanic Belt (TMVB) do not correspond with any known species. Questions: Do the collected specimens belong to a new species? What is its conservation status? How many Pinguicula species are there along the TMVB and how do they differentiate? How is the Pinguicula species richness distributed? Studied species: Pinguicula. Study site and dates: TMVB, 2005-2023. Methods: Based on herbarium specimens and recently collected material, a morphological analysis and description were made. Conservation status was assessed following IUCN Red List Categories and Criteria. Herbarium specimens and digital records of Pinguicula from the TMVB were examined to generate a list and key. We analyzed the richness distribution of Pinguicula by states, vegetation types, elevation ranges, and grid cells. Results: Pinguicula tlahuica is proposed as a new species. It is distinguished by the linear-spatulate summer leaves. The new species falls into the Endangered (EN) category. Along the TMVB, 16 species of Pinguicula are distributed. The State of México, Hidalgo and Michoacán, and the pine-oak forest were the richest. Pinguicula appeared between 759-3,427 m asl. The grid cell analyses revealed different areas with high richness. Conclusions: Along the TMVB, the Pinguicula species richness centered on the Eastern and Western sectors. Pinguicula crassifolia, P. michoacana, P. tlahuica, and P. zamudioana are endemic to the TMVB.

Goldsmit, J., C. W. McKindsey, R. W. Schlegel, D. Deslauriers, and K. L. Howland. 2024. Predicted shifts in suitable habitat of interacting benthic species in a warmer and invaded Canadian Arctic. Elem Sci Anth 12. https://doi.org/10.1525/elementa.2023.00018

Climate change and related expanding shipping activity are predicted to increase the risk of aquatic invasive species arriving in the Arctic. The goal of this study was to predict the distribution of an interconnected set of native and non-native primary producers and primary and secondary consumers in this changing context. Groups of species were selected to represent a benthic coastal Arctic food web in Hudson Bay, including kelps and eelgrass as primary producers (Alaria esculenta, Agarum clathratum, Saccharina latissima, Laminaria solidungula, and Zostera marina), amphipods as primary consumers (Gammarus oceanicus and G. setosus), and fish as secondary consumers (sculpins Gymnacanthus tricuspis, Myoxocephalus scorpius, M. scorpioides, and M. quadricornis). Ensemble models were used to predict the distribution of these native and several analogue non-native species (species known to be invasive elsewhere that can be considered analogues to Hudson Bay species): Dumontia contorta, Undaria pinnatifida, Sargassum muticum, and Codium fragile (primary producers); Gammarus tigrinus (primary consumer); and Artediellus atlanticus and A. uncinatus (secondary consumers). Predicted habitat suitability of trophic groups and analogue non-native species were overlaid under current and future climate change scenarios to assess areas of change through time. The predicted direction of potential distribution shifts varies by species identity (species composition) but not trophic group. Overall trophic relationships and roles in the ecosystem are likely to be maintained over time because while some species are predicted to decrease their potential ranges (e.g., M. quadricornis), others in the same trophic groups are predicted to increase (e.g., M. scorpius). Overlap (or lack thereof) between native and analogue non-native species pairs are expected to vary through time enabling novel interactions (e.g., competition) in space and time. This approach will help to identify current and future high-risk areas for trophic level changes and interactions with invasive species in response to global warming.

Clemente, K. J. E., and M. S. Thomsen. 2023. High temperature frequently increases facilitation between aquatic foundation species: a global meta‐analysis of interaction experiments between angiosperms, seaweeds, and bivalves. Journal of Ecology. https://doi.org/10.1111/1365-2745.14101

Many studies have quantified ecological impacts of individual foundation species (FS). However, emerging data suggest that FS often co‐occur, potentially inhibiting or facilitating one another, thereby causing indirect, cascading effects on surrounding communities. Furthermore, global warming is accelerating, but little is known about how interactions between co‐occurring FS vary with temperature.Shallow aquatic sedimentary systems are often dominated by three types of FS: slower‐growing clonal angiosperms, faster‐growing solitary seaweeds, and shell‐forming filter‐ and deposit‐feeding bivalves. Here, we tested the impacts of one FS on another by analyzing manipulative interaction experiments from 148 papers with a global meta‐analysis.We calculated 1,942 (non‐independent) Hedges’ g effect sizes, from 11,652 extracted values over performance responses, such as abundances, growths or survival of FS, and their associated standard deviations and replication levels. Standard aggregation procedures generated 511 independent Hedges’ g that was classified into six types of reciprocal impacts between FS.We found that (i) seaweeds had consistent negative impacts on angiosperms across performance responses, organismal sizes, experimental approaches, and ecosystem types; (ii) angiosperms and bivalves generally had positive impacts on each other (e.g., positive effects of angiosperms on bivalves were consistent across organismal sizes and experimental approaches, but angiosperm effect on bivalve growth and bivalve effect on angiosperm abundance were not significant); (iii) bivalves positively affected seaweeds (particularly on growth responses); (iv) there were generally no net effects of seaweeds on bivalves (except for positive effect on growth) or angiosperms on seaweeds (except for positive effect on ‘other processes’); and (v) bivalve interactions with other FS were typically more positive at higher temperatures, but angiosperm‐seaweed interactions were not moderated by temperature.Synthesis: Despite variations in experimental and spatiotemporal conditions, the stronger positive interactions at higher temperatures suggest that facilitation, particularly involving bivalves, may become more important in a future warmer world. Importantly, addressing research gaps, such as the scarcity of FS interaction experiments from tropical and freshwater systems and for less studied species, as well as testing for density‐dependent effects, could better inform aquatic ecosystem conservation and restoration efforts and broaden our knowledge of FS interactions in the Anthropocene.

Hernández, S., A. G. García, F. Arenas, M. P. Escribano, A. Jueterbock, O. De Clerck, C. A. Maggs, et al. 2023. Range‐edge populations of seaweeds show niche unfilling and poor adaptation to increased temperatures. Journal of Biogeography. https://doi.org/10.1111/jbi.14572

(no abstract available)

Kolanowska, M., S. Nowak, and A. Rewicz. 2022. Will Greenland be the last refuge for the continental European small-white orchid?Niche modeling of future distribution of Pseudorchis albida. Frontiers in Environmental Science 10. https://doi.org/10.3389/fenvs.2022.912428

Climate change affects populations of plants, animals, and fungi not only by direct modifications of their climatic niches but also by altering their ecological interactions. In this study, the future distribution of suitable habitats for the small-white orchid (Pseudorchis albida) was predicted using ecological niche modeling. In addition, the effect of global warming on the spatial distribution and availability of the pollen vectors of this species was evaluated. Due to the inconsistency in the taxonomic concepts of Pseudorchis albida, the differences in the climatic preferences of three proposed subspecies were investigated. Due to the overlap of both morphological and ecological characters of ssp. albida and ssp. tricuspis, they are considered to be synonyms, and the final analyses were carried out using ssp. albida s.l. and ssp. straminea. All of the models predict that with global warming, the number of suitable niches for these orchids will increase. This significant increase in preferred habitats is expected to occur in Greenland, but habitat loss in continental Europe will be severe. Within continental Europe, Pseudorchis albida ssp. albida will lose 44%–98% of its suitable niches and P. albida ssp. straminea will lose 46%–91% of its currently available habitats. An opposite effect of global warming was predicted for pollinators of P. albida s.l., and almost all insects studied will be subject to habitat loss. Still, within the predicted potential geographical ranges of the orchid studied, some pollen vectors are expected to occur, and these can support the long-term survival of the small-white orchid.

Escolástico-Ortiz, D. A., L. Hedenäs, D. Quandt, D. Harpke, J. Larraín, M. Stech, and J. C. Villarreal A. 2022. Cryptic speciation shapes the biogeographic history of a northern distributed moss. Botanical Journal of the Linnean Society. https://doi.org/10.1093/botlinnean/boac027

Abstract Increasing evidence indicates that wide distributed bryophyte taxa with homogeneous morphology may represent separate evolutionary lineages. The evolutionary histories of these cryptic lineages may be related to historical factors, such as the climatic oscillations in the Quaternary. Thus, the post-glacial demographic signatures paired with cryptic speciation may result in complex phylogeographic patterns. This research has two aims: to determine whether the widespread moss Racomitrium lanuginosum represents cryptic molecular taxa across the Northern Hemisphere and to infer the effects of Quaternary glaciations on spatial genetic diversity. We used the internal transcribed spacer (ITS) marker to resolve the phylogeographic history of the species and single nucleotide polymorphisms (genotyping-by-sequencing) to infer the genetic structure and demographic history. Finally, we assessed the historical changes in the distribution range using species distribution models. Racomitrium lanuginosum comprises distinct molecular lineages sympatrically distributed in the Northern Hemisphere. We also uncovered long-distance dispersal from eastern North America to Scandinavia and potential in situ survival in northern Scandinavia. Due to the genetic signatures, the Alaska Peninsula could be considered a glacial refugium. The species experienced post-glacial expansion northwards in the Northern Hemisphere, mainly from the Alaska Peninsula. Our results exemplify the complex phylogeographic history in cold environments and contribute to recognizing evolutionary patterns in the Northern Hemisphere.

Tazikeh, S., S. Zendehboudi, S. Ghafoori, A. Lohi, and N. Mahinpey. 2022. Algal bioenergy production and utilization: Technologies, challenges, and prospects. Journal of Environmental Chemical Engineering 10: 107863. https://doi.org/10.1016/j.jece.2022.107863

Increasing demand for energy and also escalating environmental pollution show that industries cannot rely on fossil fuels, and it is necessary to adopt an alternative. In recent decades, algal bioenergy has emerged as a renewable energy source in different industries. However, algal bioenergy production is costly and faces different challenges and unknown aspects that need to be addressed. Experimental and theoretical research works have revealed that the efficiency of algal bioenergy production is influenced by several factors, including algae species, temperature, light, CO2, cultivation method, and available nutrients. Algal bioenergy production on commercial scales in cost-effective ways is the main aim of industries to compete with fossil fuels. Hence, it is vital to have a comprehensive knowledge of the previous findings and attain a suitable pathway for future studies/activities. In the present review paper, the potential of microalgae bioenergy production, influential parameters, previous experimental and theoretical studies, and different methods for microalgae biofuel production from cultivation stage to utilization are reviewed. Moreover, this work discusses the engineering activities and economic analysis of microalgae cultivation to utilization, and also useful suggestions are made for future research works. The outcomes of the present work confirm that innovative engineering methods can overcome scale-up challenging, increase the rate of production, and decrease the cost of algae bioenergy production. Hence, there is no long way to produce cost-effective algae bioenergy on commercial scales.

Laeseke, P., B. Martínez, A. Mansilla, and K. Bischof. 2021. Invaders in waiting? Non-equilibrium in Southern Hemisphere seaweed distributions may lead to underestimation of Antarctic invasion potential. Frontiers of Biogeography 13. https://doi.org/10.21425/f5fbg50879

Bioinvasions pose a major threat to global biodiversity. Correlative Ecological Niche Models (ENMs) can be a valuable tool to identify invaders and invasion sites. However, in cases when species are in non-equilibrium with their native environment (i.e. do not fill their niche), correlative approach…