Science Enabled by Specimen Data

Beca-Carretero, P., S. Varela, T. Rossiter, R. Wilkes, M. Julia-Miralles, and D. B. Stengel. 2024. An integrated mapping approach highlights extended distribution and high environmental status of Irish seagrass meadows. Marine Pollution Bulletin 209: 117082. https://doi.org/10.1016/j.marpolbul.2024.117082

To address the remaining knowledge gap regarding the distribution of seagrasses in Ireland, this study aimed a) to create an updated seagrass (Zostera spp.) distribution map, and b) to evaluate the environmental quality to which seagrass meadows are exposed. To achieve the first objective, we (i) combined the available data on seagrass distribution published to date, and (ii) mapped additional meadows by implementing an integrated method based on species distribution models, satellite-derived images, and snorkelling-based surveys. We mapped 209 new seagrass meadows (14.98 km2), representing a 37.03 % increase over previously reported extents. Consequently, the total extent of Irish seagrass meadows is estimated to be at least 54.85 km2. To address the second objective, we assessed the level of anthropogenic pressure of seagrass meadows based on the index provided by the Water Framework Directive of the European Environment Agency. This study demonstrates that Irish meadows are primarily located in areas with ‘HIGH’ and ‘GOOD’ water status.

Xu, L., Z. Song, T. Li, Z. Jin, B. Zhang, S. Du, S. Liao, et al. 2024. New insights into the phylogeny and infrageneric taxonomy of Saussurea based on hybrid capture phylogenomics (Hyb-Seq). Plant Diversity. https://doi.org/10.1016/j.pld.2024.10.003

Saussurea is one of the largest and most rapidly evolving genera within the Asteraceae, comprising approximately 520 species from the Northern Hemisphere. A comprehensive infrageneric classification, supported by robust phylogenetic trees and corroborated by morphological and other data, has not yet been published. For the first time, we recovered a well-resolved nuclear phylogeny of Saussurea consisting of four main clades, which was also supported by morphological data. Our analyses show that ancient hybridization is the most likely source of deep cytoplasmic-nuclear conflict in Saussurea, and a phylogeny based on nuclear data is more suitable than one based on chloroplast data for exploring the infrageneric classification of Saussurea. Based on the nuclear phylogeny obtained and morphological characters, we proposed a revised infrageneric taxonomy of Saussurea, which includes four subgenera and 13 sections. Specifically, 1) S. sect. Cincta, S. sect. Gymnocline, S. sect. Lagurostemon, and S. sect. Strictae were moved from S. subg. Saussurea to S. subg. Amphilaena, 2) S. sect. Pseudoeriocoryne was moved from S. subg. Eriocoryne to S. subg. Amphilaena, and 3) S. sect. Laguranthera was moved from S. subg. Saussurea to S. subg. Theodorea.

Marchuk, E. A., A. K. Kvitchenko, L. A. Kameneva, A. A. Yuferova, and D. E. Kislov. 2024. East Asian forest-steppe outpost in the Khanka Lowland (Russia) and its conservation. Journal of Plant Research 137: 997–1018. https://doi.org/10.1007/s10265-024-01570-z

The Khanka Lowland forest-steppe is the most eastern outpost of the Eurasian steppe biome. It includes unique grassland plant communities with rare steppe species. These coenosis have changed under the influence of anthropogenic activity, especially during the last 100 years and included both typical steppe species and nemoral mesophytic species. To distinguish these ecological groups of plants the random forest method with three datasets of environmental variables was applied. Specifically, a model of classification with the most important bioindices to predict a mesophytic ecological group of plants with a sensitivity greater than 80% was constructed. The data demonstrated the presence of steppe species that arrived at different times in the Primorye Territory. Most of these species are associated with the Mongolian-Daurian relict steppe complex and habit in the Khanka Lowland. Other species occur only in mountains in Primorye Territory and do not persist in the Khanka Lowland. These findings emphasize the presence of relict steppe communities with a complex of true steppe species in the Khanka Lowland. Steppe communities exhibit features of anthropogenic influence definitely through the long land use period but are not anthropogenic in origin. The most steppe species are located at the eastern border of distribution in the Khanka Lowlands and are valuable in terms of conservation and sources of information about steppe species origin and the emergence of the steppe biome as a whole.

H. S. Min, H. Shinwoo, and K. K. Soo. 2024. Ensemble Projection of Climate Suitability for Alfalfa (Medicago Sativa L.) in Hamkyongbukdo. Journal of The Korean Society of Grassland and Forage Science 44: 71–82. https://doi.org/10.5333/kgfs.2024.44.2.71

It would be advantageous to grow legume forage crops in order to increase the productivity and sustainability of sloped croplands in Hamkyongbukdo. In particular, the identification of potential cultivation areas for alfalfa in the given region could aid decision-making on policies and management related to forage crop production in the future. This study aimed to analyze the climate suitability of alfalfa in Hamkyongbukdo under current and future climate conditions using the Fuzzy Union model. The climate suitability predicted by the Fuzzy Union model was compared with the actual alfalfa cultivation area in the northern United States. Climate data obtained from 11 global climate models were used as input data for calculation of climate suitability in the study region to examine the uncertainty of projections under future climate conditions. The area where the climate suitability index was greater than a threshold value (22.6) explained about 44% of the variation in actual alfalfa cultivation areas by state in the northern United States. The climatic suitability of alfalfa was projected to decrease in most areas of Hamkyongbukdo under future climate scenarios. The climatic suitability in Onseong and Gyeongwon County was analyzed to be over 88 in the current climate conditions. However, it was projected to decrease by about 66% in the given areas by the 2090s. Our study illustrated that the impact of climate change on suitable cultivation areas was highly variable when different climate data were used as inputs to the Fuzzy Union model. Still, the ensemble of the climate suitability projections for alfalfa was projected to decrease considerably due to summer depression in Hamkyongbukdo. It would be advantageous to predict suitable cultivation areas by adding soil conditions or to predict the climate suitability of other leguminous crops such as hairy vetch, which merits further studies.

Hämälä, T., C. Moore, L. Cowan, M. Carlile, D. Gopaulchan, M. K. Brandrud, S. Birkeland, et al. 2024. Impact of whole-genome duplications on structural variant evolution in Cochlearia. Nature Communications 15. https://doi.org/10.1038/s41467-024-49679-y

Polyploidy, the result of whole-genome duplication (WGD), is a major driver of eukaryote evolution. Yet WGDs are hugely disruptive mutations, and we still lack a clear understanding of their fitness consequences. Here, we study whether WGDs result in greater diversity of genomic structural variants (SVs) and how they influence evolutionary dynamics in a plant genus, Cochlearia (Brassicaceae). By using long-read sequencing and a graph-based pangenome, we find both negative and positive interactions between WGDs and SVs. Masking of recessive mutations due to WGDs leads to a progressive accumulation of deleterious SVs across four ploidal levels (from diploids to octoploids), likely reducing the adaptive potential of polyploid populations. However, we also discover putative benefits arising from SV accumulation, as more ploidy-specific SVs harbor signals of local adaptation in polyploids than in diploids. Together, our results suggest that SVs play diverse and contrasting roles in the evolutionary trajectories of young polyploids. Cochlearia is an evolutionarily dynamic genus with different base chromosome numbers and ploidal levels. Here, the authors construct a graph-based pangenome for Cochlearia and reveal that whole-genome duplication associated with greater diversity of genomic structural variation and their possible function in adaptation.

Bürger, M., and J. Chory. 2024. A potential role of heat‐moisture couplings in the range expansion of Striga asiatica. Ecology and Evolution 14. https://doi.org/10.1002/ece3.11332

Parasitic weeds in the genera Orobanche, Phelipanche (broomrapes) and Striga (witchweeds) have a devastating impact on food security across much of Africa, Asia and the Mediterranean Basin. Yet, how climatic factors might affect the range expansion of these weeds in the context of global environmental change remains unexplored. We examined satellite‐based environmental variables such as surface temperature, root zone soil moisture, and elevation, in relation to parasitic weed distribution and environmental conditions over time, in combination with observational data from the Global Biodiversity Information Facility (GBIF). Our analysis reveals contrasting environmental and altitude preferences in the genera Striga and Orobanche. Asiatic witchweed (Striga asiatica), which infests corn, rice, sorghum, and sugar cane crops, appears to be expanding its range in high elevation habitats. It also shows a significant association with heat‐moisture coupling events, the frequency of which is rising in such environments. These results point to geographical shifts in distribution and abundance in parasitic weeds due to climate change.

Noori, S., A. Hofmann, D. Rödder, M. Husemann, and H. Rajaei. 2024. A window to the future: effects of climate change on the distribution patterns of Iranian Zygaenidae and their host plants. Biodiversity and Conservation. https://doi.org/10.1007/s10531-023-02760-2

Climate change has been suggested as an important human-induced driver for the ongoing sixth mass extinction. As a common response to climate change, and particularly global warming, species move toward higher latitudes or shift uphill. Furthermore, rapid climate change impacts the biotic interactions of species, particularly in the case of Zygaenid moths which exhibit high specialization in both habitat and host plant preferences. Iranian Zygaenidae are relatively well-known and represent a unique fauna with a high endemism rate (46%) in the whole Palearctic; as such they are a good model group to study the impact of climate change on future distributions. In this study, we used species distribution models (SDMs) and ensembles of small models (ESMs) to investigate the impact of climate change on the future distribution of endemic and non-endemic species of zygaenids, as well as their larval host plants. Three different climate scenarios were applied to forecast the probable responses of the species to different climate change intensities. Our results suggest that the central and southern parts of the country will be impacted profoundly by climate change compared to the northern regions. Beyond this, most endemic species will experience an altitudinal shift from their current range, while non-endemic species may move towards higher latitudes. Considering that the regions with higher diversity of zygaenids are limited to mountainous areas, mainly within the Irano-Anatolian biodiversity hotspot, the identification of their local high diversity regions for conservation practices has a high priority.

Weiss, R. M., F. Zanetti, B. Alberghini, D. Puttick, M. A. Vankosky, A. Monti, and C. Eynck. 2024. Bioclimatic analysis of potential worldwide production of spring‐type camelina [Camelina sativa (L.) Crantz] seeded in the spring. GCB Bioenergy 16. https://doi.org/10.1111/gcbb.13126

Camelina [Camelina sativa (L.) Crantz] is a Brassicaceae oilseed that is gaining interest worldwide as low‐maintenance crop for diverse biobased applications. One of the most important factors determining its productivity is climate. We conducted a bioclimate analysis in order to analyze the relationship between climatic factors and the productivity of spring‐type camelina seeded in the spring, and to identify regions of the world with potential for camelina in this scenario. Using the modelling tool CLIMEX, a bioclimatic model was developed for spring‐seeded spring‐type camelina to match distribution, reported seed yields and phenology records in North America. Distribution, yield, and phenology data from outside of North America were used as independent datasets for model validation and demonstrated that model projections agreed with published distribution records, reported spring‐seeded camelina yields, and closely predicted crop phenology in Europe, South America, and Asia. Sensitivity analysis, used to quantify the response of camelina to changes in precipitation and temperature, indicated that crop performance was more sensitive to moisture than temperature index parameters, suggesting that the yield potential of spring‐seeded camelina may be more strongly impacted by water‐limited conditions than by high temperatures. Incremental climate scenarios also revealed that spring‐seeded camelina production will exhibit yield shifts at the continental scale as temperature and precipitation deviate from current conditions. Yield data were compared with indices of climatic suitability to provide estimates of potential worldwide camelina productivity. This information was used to identify new areas where spring‐seeded camelina could be grown and areas that may permit expanded production, including eastern Europe, China, eastern Russia, Australia and New Zealand. Our model is the first to have taken a systematic approach to determine suitable regions for potential worldwide production of spring‐seeded camelina.

Metreveli, V., H. Kreft, I. Akobia, Z. Janiashvili, Z. Nonashvili, L. Dzadzamia, Z. Javakhishvili, and A. Gavashelishvili. 2023. Potential Distribution and Suitable Habitat for Chestnut (Castanea sativa). Forests 14: 2076. https://doi.org/10.3390/f14102076

Chestnut, Castanea sativa Miller (Fagales: Fagaceae), is an ecologically and economically important tree species of the forest ecosystem in Southern Europe, North-Western Europe, Western Asia, North Africa, and the Caucasus. The distributional range of chestnut in Europe has been highly modified by humans since ancient times. Biotic and abiotic factors have dramatically changed its distribution. Historic anthropogenic range expansion makes it difficult to identify habitat requirements for natural stands of chestnut. In the Caucasus, natural stands of chestnut survived in glacial forest refugia and landscapes that have been difficult for humans to colonize. To identify the species reliable habitat requirements, we estimated the relationship between climatic variables and 620 occurrence locations of natural chestnut stands from the Caucasus and validated the model using GBIF data from outside the Caucasus. We found that our best model is reasonably accurate and the data from the Caucasus characterize chestnut stands throughout the species range well.

Rodríguez-Merino, A. 2023. Identifying and Managing Areas under Threat in the Iberian Peninsula: An Invasion Risk Atlas for Non-Native Aquatic Plant Species as a Potential Tool. Plants 12: 3069. https://doi.org/10.3390/plants12173069

Predicting the likelihood that non-native species will be introduced into new areas remains one of conservation’s greatest challenges and, consequently, it is necessary to adopt adequate management measures to mitigate the effects of future biological invasions. At present, not much information is available on the areas in which non-native aquatic plant species could establish themselves in the Iberian Peninsula. Species distribution models were used to predict the potential invasion risk of (1) non-native aquatic plant species already established in the peninsula (32 species) and (2) those with the potential to invade the peninsula (40 species). The results revealed that the Iberian Peninsula contains a number of areas capable of hosting non-native aquatic plant species. Areas under anthropogenic pressure are at the greatest risk of invasion, and the variable most related to invasion risk is temperature. The results of this work were used to create the Invasion Risk Atlas for Alien Aquatic Plants in the Iberian Peninsula, a novel online resource that provides information about the potential distribution of non-native aquatic plant species. The atlas and this article are intended to serve as reference tools for the development of public policies, management regimes, and control strategies aimed at the prevention, mitigation, and eradication of non-native aquatic plant species.