Science Enabled by Specimen Data
Menegotto, A., D. P. Tittensor, R. K. Colwell, and T. F. Rangel. 2024. Sampling Simulation in a Virtual Ocean Reveals Strong Sampling Effect in Marine Diversity Patterns. Global Ecology and Biogeography 34. https://doi.org/10.1111/geb.13952
ABSTRACTAimUndersampling and other sources of sampling bias pose significant issues in marine macroecology, particularly when shaping conservation and management decisions. Yet, determining the extent to which such biases impact our understanding of marine diversity remains elusive. Here, utilising empirical data on sampling efforts, we sampled from virtually established species distributions to evaluate how deep is the influence of sampling bias on estimations of the latitudinal gradient in marine diversity.LocationAtlantic Ocean.Time PeriodPresent.Taxa StudiedOphiuroidea.MethodsWe developed a computer simulation that implements two null models of species distribution (the geometric constraints and the area model) in a two‐dimensional domain, replicates the latitudinal distribution of historical sampling efforts and then quantifies diversity metrics (observed and estimated species richness) and sample completeness for each grid cell and latitudinal band.ResultsWe found consistent patterns of observed species richness across models, noting peaks at midlatitudes regardless of whether the true richness was unimodal or flat. Dips in equatorial diversity persisted even after using different methods of species richness estimation. Additional simulations showed that estimators' accuracy improved with increased sampling efforts, but only when samples were randomly distributed. Spatially aggregated samples inflate completeness without necessarily enhancing estimators' accuracy.Main ConclusionsThis finding emphasises the imperative of bolstering sampling efforts at tropical latitudes and deploying robust statistical techniques to mitigate undersampling effects. Meanwhile, we suggest considering sampling bias as an alternative null hypothesis for recorded marine diversity patterns.
Luna-Aranguré, C., and E. Vázquez-Domínguez. 2024. Bears into the Niche-Space: Phylogeography and Phyloclimatic Model of the Family Ursidae. Diversity 16: 223. https://doi.org/10.3390/d16040223
Assessing niche evolution remains an open question and an actively developing area of study. The family Ursidae consists of eight extant species for which, despite being the most studied family of carnivores, little is known about the influence of climate on their evolutionary history and diversification. We evaluated their evolutionary patterns based on a combined phylogeography and niche modeling approach. We used complete mitogenomes, estimated divergence times, generated ecological niche models and applied a phyloclimatic model to determine the species evolutionary and diversification patterns associated with their respective environmental niches. We inferred the family evolutionary path along the environmental conditions of maximum temperature and minimum precipitation, from around 20 million years ago to the present. Our findings show that the phyloclimatic niches of the bear species occupy most of the environmental space available on the planet, except for the most extreme warm conditions, in accordance with the wide geographic distribution of Ursidae. Moreover, some species exhibit broader environmental niches than others, and in some cases, they explore precipitation axes more extensively than temperature axes or vice versa, suggesting that not all species are equally adaptable to these variables. We were able to elucidate potential patterns of niche conservatism and evolution, as well as niche overlapping, suggesting interspecific competitive exclusion between some of the bear species. We present valuable insights into the ecological and evolutionary processes driving the diversification and distribution of the Ursidae. Our approach also provides essential information for guiding effective conservation strategies, particularly in terms of distribution limits in the face of climate change.
Granja-Fernández, R., B. Maya-Alvarado, F. A. Rodríguez-Zaragoza, and A. López-Pérez. 2023. Ophiuroidea (Echinodermata) diversity partitioning across the eastern tropical Pacific. Regional Studies in Marine Science 60: 102835. https://doi.org/10.1016/j.rsma.2023.102835
Ophiuroidea is one of the most suitable marine groups for exploring diversity partitioning in the ocean due to its wide distribution and particular lifestyles. Nevertheless, diversity and its variation have yet to be investigated, and even basic information for large areas such as the eastern tropical Pacific (ETP) is still lacking. The present contribution explores α, β, and γ-diversity patterns of Ophiuroidea from the ETP at four spatial scales (Operational Geographic Units, Ecoregions, Provinces, and Realms). Based on literature records, databases, and scientific collections, an occurrence matrix was constructed for 69 shallow water (0–200 m) Ophiuroidea of the ETP (Mexico–Peru). Diversity evaluation based on rarefaction curves indicated that the observed richness tends to reach the asymptote. At the province and the ecoregion levels, β-diversity was the most important component explaining γ-diversity. The components that mainly contributed to the differentiation between provinces and ecoregions were the intersection of nestedness and β-diversity. PERMANOVA and SIMPER results showed that species composition presented significant differences at all spatial levels. The PCO ordination indicated that the first component (PCO1) explained the variation in species composition in a longitudinal gradient between coastal and oceanic ecoregions, while PCO2 showed a latitudinal gradient. The shade plot yielded three clusters (northern, southern, and widely distributed species). In general, α-diversity was explained by differences in sampling effort and methods; in contrast, β-diversity and its components were mainly explained by patterns and processes occurring at different spatial scales (provinces and ecoregions) such as oceanographic conditions, geographic extension, dispersal, and environmental heterogeneity. This work represents the first attempt to analyze the distribution patterns of shallow-water Ophiuroidea from the ETP.
Sweet, F. S. T., B. Apfelbeck, M. Hanusch, C. Garland Monteagudo, and W. W. Weisser. 2022. Data from public and governmental databases show that a large proportion of the regional animal species pool occur in cities in Germany. Journal of Urban Ecology 8. https://doi.org/10.1093/jue/juac002
Cities have been shown to be biodiverse, but it is unclear what fraction of a regional species pool can live within city borders and how this differs between taxa. Among animals, most research has focused on a few well-studied taxa, such as birds or butterflies. For other species, progress is limite…
Ramírez, F., V. Sbragaglia, K. Soacha, M. Coll, and J. Piera. 2022. Challenges for Marine Ecological Assessments: Completeness of Findable, Accessible, Interoperable, and Reusable Biodiversity Data in European Seas. Frontiers in Marine Science 8. https://doi.org/10.3389/fmars.2021.802235
The ongoing contemporary biodiversity crisis may result in much of ocean’s biodiversity to be lost or deeply modified without even being known. As the climate and anthropogenic-related impacts on marine systems accelerate, biodiversity knowledge integration is urgently required to evaluate and monit…
Li, D., Z. Li, Z. Liu, Y. Yang, A. G. Khoso, L. Wang, and D. Liu. 2022. Climate change simulations revealed potentially drastic shifts in insect community structure and crop yields in China’s farmland. Journal of Pest Science. https://doi.org/10.1007/s10340-022-01479-3
Climate change will cause drastic fluctuations in agricultural ecosystems, which in turn may affect global food security. We used ecological niche modeling to predict the potential distribution for four cereal aphids (i.e., Sitobion avenae, Rhopalosiphum padi, Schizaphis graminum, and Diurphis noxia…
Qu, J., Y. Xu, Y. Cui, S. Wu, L. Wang, X. Liu, Z. Xing, et al. 2021. MODB: a comprehensive mitochondrial genome database for Mollusca. Database 2021. https://doi.org/10.1093/database/baab056
Mollusca is the largest marine phylum, comprising about 23% of all named marine organisms, Mollusca systematics are still in flux, and an increase in human activities has affected Molluscan reproduction and development, strongly impacting diversity and classification. Therefore, it is necessary to e…
Faurby, S., and M. B. Araújo. 2018. Anthropogenic range contractions bias species climate change forecasts. Nature Climate Change 8: 252–256. https://doi.org/10.1038/s41558-018-0089-x
Forecasts of species range shifts under climate change most often rely on ecological niche models, in which characterizations of climate suitability are highly contingent on the species range data used. If ranges are far from equilibrium under current environmental conditions, for instance owing to …