Science Enabled by Specimen Data

Pan, Y., C. Fu, C. Tian, H. Zhang, X. Wang, and M. Li. 2025. Unraveling the Impact of Environmental Factors and Evolutionary History on Species Richness Patterns of the Genus Sorbus at Global Level. Plants 14: 338. https://doi.org/10.3390/plants14030338

Understanding the drivers of species richness patterns is a major goal of ecology and evolutionary biology, and the drivers vary across regions and taxa. Here, we assessed the influence of environmental factors and evolutionary history on the pattern of species richness in the genus Sorbus (110 species). We mapped the global species richness pattern of Sorbus at a spatial resolution of 200 × 200 km, using 10,652 specimen records. We used stepwise regression to assess the relationship between 23 environmental predictors and species richness and estimated the diversification rate of Sorbus based on chloroplast genome data. The effects of environmental factors were explained by adjusted R2, and evolutionary factors were inferred based on differences in diversification rates. We found that the species richness of Sorbus was highest in the Hengduan Mountains (HDM), which is probably the center of diversity. Among the selected environmental predictors, the integrated model including all environmental predictors had the largest explanatory power for species richness. The determinants of species richness show regional differences. On the global and continental scale, energy and water availability become the main driving factors. In contrast, climate seasonality is the primary factor in the HDM. The diversification rate results showed no significant differences between HDM and non-HDM, suggesting that evolutionary history may have limited impact on the pattern of Sorbus species richness. We conclude that environmental factors play an important role in shaping the global pattern of Sorbus species richness, while diversification rates have a lesser impact.

Olivares-Pinto, U., J. C. S. Lopes, C. Ruiz-Aguilar, Y. Oki, and G. W. Fernandes. 2025. Adapting to a shifting planet: The future of Drosera species amidst global challenges and conservation imperatives. Anthropocene 49: 100466. https://doi.org/10.1016/j.ancene.2025.100466

This study assesses the potential effects of climate change on the distribution of the Drosera genus, which is a carnivorous plant group widely distributed in South America. The Drosera species act as adequate biological indicators, with their fitness performance reflecting the health of ecosystems. Through the application of species distribution models and the analysis of bioclimatic variables, the adaptability of 39 Drosera species to evolving climatic conditions was assessed, revealing their capacity to thrive in diverse habitats, from nutrient-deficient soils to regions with high atmospheric CO2 concentrations. While many species show adaptability, environmental forecasts using two General Circulation Models indicate a decrease in favorable habitats by 2050 and 2070. It is expected that about 71.79 % of species will encounter shrinking habitat suitability, while 28.21 % may see an increase in habitat suitability. This anticipated habitat loss underscores the critical need for proactive conservation measures, including habitat preservation, ecological restoration, assisted migration, and genetic conservation efforts, to counteract the adverse effects of climate change. Additionally, the study highlights the importance of refining species distribution models and deepening our understanding of the ecological dynamics of Drosera species in response to environmental changes. By offering insights into the challenges and opportunities for conserving Drosera species in a changing climate, this work lays a solid groundwork for future ecological research and conservation initiatives. It calls for an integrated approach that combines scientific inquiry with strategic conservation actions to ensure the survival of these unique plant group and ecological integrity during global environmental shifts.

MOLINO, S., G. SANTOS, R. VÁZQUEZ, R. MEDINA, and J. M. G. Y. GALÁN. 2024. Monograph of the genera Struthiopteris Scop. and Spicantopsis Nakai (Blechnaceae, Polypodiopsida). Phytotaxa 677: 1–48. https://doi.org/10.11646/phytotaxa.677.1.1

The Blechnaceae fern family, comprising approximately 250 species, exhibits a subcosmopolitan distribution but showcases notable diversity in South America and the Austropacific region. Recent taxonomic revisions expanded the generic treatment within the family, Resulting, among other things, in the resurrection of the genus Spicantopsis. This genus, segregated from Struthiopteris, now encompasses three species endemic to East Asia. Struthiopteris, on the other hand, has three species distributed in Japan, Europe, North of Africa, and western North America. Molecular evidence, coupled with morphoanatomical traits, supported this taxonomic distinction. Despite subsequent studies on palynological and morphoanatomical characteristics, a comprehensive global monograph of Struthiopteris and Spicantopsis is lacking. This paper aims to fill this gap by synthesizing available information, providing identification keys, full descriptions, taxonomic notes, and some necessary type designation for all species within both genera. The study, based on the examination of 1,649 herbarium specimens and digital materials, underscores the importance of anatomical and morphological characters in fern taxonomy. Mapping distribution data further enhances understanding of the geographic ranges of these ferns. This comprehensive synthesis contributes to the ongoing elucidation of fern diversity and taxonomy.

Calleja-Satrustegui, A., A. Echeverría, I. Ariz, J. Peralta de Andrés, and E. M. González. 2024. Unlocking nature’s drought resilience: a focus on the parsimonious root phenotype and specialised root metabolism in wild Medicago populations. Plant and Soil. https://doi.org/10.1007/s11104-024-06943-w

Abstract  Background and aims Crop wild relatives, exposed to strong natural selection, exhibit effective tolerance traits against stresses. While an aggressive root proliferation phenotype has long been considered advantageous for a range of stresses, it appears to be counterproductive under drought due to its high metabolic cost. Recently, a parsimonious root phenotype, metabolically more efficient, has been suggested to be better adapted to semiarid environments, although it is not clear that this phenotype is a trait exhibited by crop wild relatives. Methods Firstly, we analysed the root phenotype and carbon metabolism in four Medicago crop wild relatives adapted to a semiarid environment and compared them with the cultivated M. truncatula Jemalong (A17). Secondly, we exposed the cultivated (probably the least adapted genotype to aridity) and the wild (the most common one in arid zones) M. truncatula genotypes to water deficit. The carbon metabolism response in different parts of their roots was analysed. Results A reduced carbon investment per unit of root length was a common trait in the four wild genotypes, indicative of an evolution towards a parsimonious root phenotype. During the water deficit experiment, the wild M. truncatula showed higher tolerance to drought, along with a superior ability of its taproot to partition sucrose and enhanced capacity of its fibrous roots to maintain sugar homeostasis. Conclusion A parsimonious root phenotype and the spatial specialization of root carbon metabolism represent two important drought tolerance traits. This work provides relevant findings to understand the response of Medicago species roots to water deficit.

Beca-Carretero, P., S. Varela, T. Rossiter, R. Wilkes, M. Julia-Miralles, and D. B. Stengel. 2024. An integrated mapping approach highlights extended distribution and high environmental status of Irish seagrass meadows. Marine Pollution Bulletin 209: 117082. https://doi.org/10.1016/j.marpolbul.2024.117082

To address the remaining knowledge gap regarding the distribution of seagrasses in Ireland, this study aimed a) to create an updated seagrass (Zostera spp.) distribution map, and b) to evaluate the environmental quality to which seagrass meadows are exposed. To achieve the first objective, we (i) combined the available data on seagrass distribution published to date, and (ii) mapped additional meadows by implementing an integrated method based on species distribution models, satellite-derived images, and snorkelling-based surveys. We mapped 209 new seagrass meadows (14.98 km2), representing a 37.03 % increase over previously reported extents. Consequently, the total extent of Irish seagrass meadows is estimated to be at least 54.85 km2. To address the second objective, we assessed the level of anthropogenic pressure of seagrass meadows based on the index provided by the Water Framework Directive of the European Environment Agency. This study demonstrates that Irish meadows are primarily located in areas with ‘HIGH’ and ‘GOOD’ water status.

Xu, L., Z. Song, T. Li, Z. Jin, B. Zhang, S. Du, S. Liao, et al. 2024. New insights into the phylogeny and infrageneric taxonomy of Saussurea based on hybrid capture phylogenomics (Hyb-Seq). Plant Diversity. https://doi.org/10.1016/j.pld.2024.10.003

Saussurea is one of the largest and most rapidly evolving genera within the Asteraceae, comprising approximately 520 species from the Northern Hemisphere. A comprehensive infrageneric classification, supported by robust phylogenetic trees and corroborated by morphological and other data, has not yet been published. For the first time, we recovered a well-resolved nuclear phylogeny of Saussurea consisting of four main clades, which was also supported by morphological data. Our analyses show that ancient hybridization is the most likely source of deep cytoplasmic-nuclear conflict in Saussurea, and a phylogeny based on nuclear data is more suitable than one based on chloroplast data for exploring the infrageneric classification of Saussurea. Based on the nuclear phylogeny obtained and morphological characters, we proposed a revised infrageneric taxonomy of Saussurea, which includes four subgenera and 13 sections. Specifically, 1) S. sect. Cincta, S. sect. Gymnocline, S. sect. Lagurostemon, and S. sect. Strictae were moved from S. subg. Saussurea to S. subg. Amphilaena, 2) S. sect. Pseudoeriocoryne was moved from S. subg. Eriocoryne to S. subg. Amphilaena, and 3) S. sect. Laguranthera was moved from S. subg. Saussurea to S. subg. Theodorea.

Björklund, N., J. Boberg, S. Hannunen, and J. Tuomola. 2024. Assessment of the potential area for the establishment of the Colorado potato beetle in Finland and Sweden. Food Risk Assess Europe 2. https://doi.org/10.2903/fr.efsa.2024.fr-0042

The Colorado potato beetle (CPB, Leptinotarsa decemlineata) is a protected zone quarantine pest in the southern parts of Finland and Sweden. The units responsible for pest risk assessments in Finland and Sweden were requested to identify the geographical areas likely to be suitable for establishment of the CPB given a climate change scenario that covers the years 2023–2040.

Marchuk, E. A., A. K. Kvitchenko, L. A. Kameneva, A. A. Yuferova, and D. E. Kislov. 2024. East Asian forest-steppe outpost in the Khanka Lowland (Russia) and its conservation. Journal of Plant Research 137: 997–1018. https://doi.org/10.1007/s10265-024-01570-z

The Khanka Lowland forest-steppe is the most eastern outpost of the Eurasian steppe biome. It includes unique grassland plant communities with rare steppe species. These coenosis have changed under the influence of anthropogenic activity, especially during the last 100 years and included both typical steppe species and nemoral mesophytic species. To distinguish these ecological groups of plants the random forest method with three datasets of environmental variables was applied. Specifically, a model of classification with the most important bioindices to predict a mesophytic ecological group of plants with a sensitivity greater than 80% was constructed. The data demonstrated the presence of steppe species that arrived at different times in the Primorye Territory. Most of these species are associated with the Mongolian-Daurian relict steppe complex and habit in the Khanka Lowland. Other species occur only in mountains in Primorye Territory and do not persist in the Khanka Lowland. These findings emphasize the presence of relict steppe communities with a complex of true steppe species in the Khanka Lowland. Steppe communities exhibit features of anthropogenic influence definitely through the long land use period but are not anthropogenic in origin. The most steppe species are located at the eastern border of distribution in the Khanka Lowlands and are valuable in terms of conservation and sources of information about steppe species origin and the emergence of the steppe biome as a whole.

H. S. Min, H. Shinwoo, and K. K. Soo. 2024. Ensemble Projection of Climate Suitability for Alfalfa (Medicago Sativa L.) in Hamkyongbukdo. Journal of The Korean Society of Grassland and Forage Science 44: 71–82. https://doi.org/10.5333/kgfs.2024.44.2.71

It would be advantageous to grow legume forage crops in order to increase the productivity and sustainability of sloped croplands in Hamkyongbukdo. In particular, the identification of potential cultivation areas for alfalfa in the given region could aid decision-making on policies and management related to forage crop production in the future. This study aimed to analyze the climate suitability of alfalfa in Hamkyongbukdo under current and future climate conditions using the Fuzzy Union model. The climate suitability predicted by the Fuzzy Union model was compared with the actual alfalfa cultivation area in the northern United States. Climate data obtained from 11 global climate models were used as input data for calculation of climate suitability in the study region to examine the uncertainty of projections under future climate conditions. The area where the climate suitability index was greater than a threshold value (22.6) explained about 44% of the variation in actual alfalfa cultivation areas by state in the northern United States. The climatic suitability of alfalfa was projected to decrease in most areas of Hamkyongbukdo under future climate scenarios. The climatic suitability in Onseong and Gyeongwon County was analyzed to be over 88 in the current climate conditions. However, it was projected to decrease by about 66% in the given areas by the 2090s. Our study illustrated that the impact of climate change on suitable cultivation areas was highly variable when different climate data were used as inputs to the Fuzzy Union model. Still, the ensemble of the climate suitability projections for alfalfa was projected to decrease considerably due to summer depression in Hamkyongbukdo. It would be advantageous to predict suitable cultivation areas by adding soil conditions or to predict the climate suitability of other leguminous crops such as hairy vetch, which merits further studies.

Worth, J. R. P., S. Kikuchi, S. Kanetani, D. Takahashi, M. Aizawa, E. A. Marchuk, H. J. Choi, et al. 2024. Chloroplast genome‐based genetic resources via genome skimming for the subalpine forests of Japan and adjacent regions. Ecology and Evolution 14. https://doi.org/10.1002/ece3.11584

The Japanese subalpine zone is dominated by an ecologically important forest biome, subalpine coniferous forest, constituting a distinct assemblage of cold‐tolerant angiosperm and conifer species. While being relatively intact compared to other forest biomes in Japan, subalpine coniferous forests are under significant threat from deer browsing, global warming and small population size effects. However, there is a severe lack of genetic resources available for this biome's major constituent plant species. This study aimed to develop chloroplast genome‐based genetic resources for 12 widespread subalpine tree and shrub species (7 angiosperms and 5 conifers) via genome skimming of whole‐genomic DNA using short reads (100–150 bp in length). For 10 species, whole chloroplast genomes were assembled via de novo‐based methods from 4 to 10 individuals per species sampled from across their ranges in Japan and, for non‐Japanese endemic species, elsewhere in northeast Asia. A total of 566 single nucleotide polymorphisms for Japanese samples and 768 for all samples (varying from 2 to 202 per species) were identified which were distributed in geographically restricted lineages in most species. In addition, between 9 and 58 polymorphic simple sequence repeat regions were identified per species. For two Ericaceae species (Rhododendron brachycarpum and Vaccinium vitis‐idaea) characterised by large chloroplast genomes, de novo assembly failed, but single nucleotide polymorphisms could be identified using reference mapping. These data will be useful for genetic studies of species taxonomic relationships, investigating phylogeographic patterns within species, developing chloroplast‐based markers for conservation genetic studies and has potential application for studies of environmental and ancient DNA.