Science Enabled by Specimen Data

Magri, R. A., F. Luebert, A. Cabral, S. Alcantara, L. G. Lohmann, J. Prado, and J. C. Lopes. 2024. Historical biogeography of Vellozia (Velloziaceae) reveals range expansion in South American mountaintops after climatic cooling events and increased diversification rates after the occupation of Southern Espinhaço Province. Botanical Journal of the Linnean Society. https://doi.org/10.1093/botlinnean/boae072

The campos rupestres and the Brazilian Atlantic Forest Inselbergs (BAFI) are highly diverse vegetation types that grow on mountaintops of eastern Brazil and show outstanding levels of endemism. The plant family Velloziaceae is an iconic element of these vegetations, with the genus Vellozia, being exceptionally abundant in both these vegetations. In this study, we use Vellozia as a model to address three main questions: (i) What was the distribution of Vellozia’s most recent common ancestor? (ii) Did the range expansions of Vellozia occur during periods characterized by global cooling? (iii) When did Vellozia colonize the different South American highlands they occupy nowadays? To address these questions, we reconstructed the phylogeny of Vellozia using sequences of four molecular markers analysed using Bayesian and maximum likelihood inferences. We used the resulting phylogeny to reconstruct the ancestral distribution of Vellozia using the DEC model. Our findings indicate that Vellozia originated and subsequently diversified in the Oligocene, when the genus was broadly distributed through the Andes, BAFI, Cerrado, Caatinga, and the Chapada Diamantina, suggesting that the Cerrado may acted as a corridor between the Andes and eastern mountaintop vegetations. Vellozia subsequently occupied the southern Espinhaço during the Early Miocene, which was followed by increased diversification rates and several range expansions, especially after the Middle-Miocene Climatic Optimum, when cooler and drier periods allowed the expansion of open environments and the retraction of forests, allowing Vellozia to expand their distribution. These results highlight the unique evolutionary history of Vellozia and the importance of climatic cooling for the expansion of the genus.

Bürger, M., and J. Chory. 2024. A potential role of heat‐moisture couplings in the range expansion of Striga asiatica. Ecology and Evolution 14. https://doi.org/10.1002/ece3.11332

Parasitic weeds in the genera Orobanche, Phelipanche (broomrapes) and Striga (witchweeds) have a devastating impact on food security across much of Africa, Asia and the Mediterranean Basin. Yet, how climatic factors might affect the range expansion of these weeds in the context of global environmental change remains unexplored. We examined satellite‐based environmental variables such as surface temperature, root zone soil moisture, and elevation, in relation to parasitic weed distribution and environmental conditions over time, in combination with observational data from the Global Biodiversity Information Facility (GBIF). Our analysis reveals contrasting environmental and altitude preferences in the genera Striga and Orobanche. Asiatic witchweed (Striga asiatica), which infests corn, rice, sorghum, and sugar cane crops, appears to be expanding its range in high elevation habitats. It also shows a significant association with heat‐moisture coupling events, the frequency of which is rising in such environments. These results point to geographical shifts in distribution and abundance in parasitic weeds due to climate change.

Sánchez, C. A., H. Li, K. L. Phelps, C. Zambrana-Torrelio, L.-F. Wang, P. Zhou, Z.-L. Shi, et al. 2022. A strategy to assess spillover risk of bat SARS-related coronaviruses in Southeast Asia. Nature Communications 13. https://doi.org/10.1038/s41467-022-31860-w

Emerging diseases caused by coronaviruses of likely bat origin (e.g., SARS, MERS, SADS, COVID-19) have disrupted global health and economies for two decades. Evidence suggests that some bat SARS-related coronaviruses (SARSr-CoVs) could infect people directly, and that their spillover is more frequent than previously recognized. Each zoonotic spillover of a novel virus represents an opportunity for evolutionary adaptation and further spread; therefore, quantifying the extent of this spillover may help target prevention programs. We derive current range distributions for known bat SARSr-CoV hosts and quantify their overlap with human populations. We then use probabilistic risk assessment and data on human-bat contact, human viral seroprevalence, and antibody duration to estimate that a median of 66,280 people (95% CI: 65,351–67,131) are infected with SARSr-CoVs annually in Southeast Asia. These data on the geography and scale of spillover can be used to target surveillance and prevention programs for potential future bat-CoV emergence. Coronaviruses may spill over from bats to humans. This study uses epidemiological data, species distribution models, and probabilistic risk assessment to map overlap among people and SARSr-CoV bat hosts and estimate how many people are infected with bat-origin SARSr-CoVs in Southeast Asia annually.

Bywater‐Reyes, S., R. M. Diehl, A. C. Wilcox, J. C. Stella, and L. Kui. 2022. A Green New Balance: Interactions among riparian vegetation plant traits and morphodynamics in alluvial rivers. Earth Surface Processes and Landforms 47: 2410–2436. https://doi.org/10.1002/esp.5385

The strength of interactions between plants and river processes is mediated by plant traits and fluvial conditions, including above‐ground biomass, stem density and flexibility, channel and bed material properties, and flow and sediment regimes. In many rivers, concurrent changes in 1) the composition of riparian vegetation communities as a result of exotic species invasion and 2) shifts in hydrology have altered physical and ecological conditions in a manner that has been mediated by feedbacks between vegetation and morphodynamic processes. We review how Tamarix, which has invaded many U.S. Southwest waterways, and Populus species, woody pioneer trees that are native to the region, differentially affect hydraulics, sediment transport, and river morphology. We draw on flume, field, and modeling approaches spanning the individual seedling to river‐corridor scales. In a flume study, we found differences in the crown morphology, stem density, and flexibility of Tamarix compared to Populus influenced near‐bed flow velocities in a manner that favored aggradation associated with Tamarix. Similarly, at the patch and corridor scales, observations confirmed increased aggradation with increased vegetation density. Furthermore, long‐term channel adjustments were different for Tamarix‐ versus Populus‐dominated reaches, with faster and greater geomorphic adjustments for Tamarix. Collectively, our studies show how plant‐trait differences between Tamarix and Populus, from individual seedlings to larger spatial and temporal scales, influence the co‐adjustment of rivers and riparian plant communities. These findings provide a basis for predicting changes in alluvial riverine systems which we conceptualize as a Green New Balance model that considers how channels may adjust to changes in plant traits and community structure in additional to alterations in flow and sediment supply. We offer suggestions regarding how the Green New Balance can be used in management and invasive species management.

Xue, T., S. R. Gadagkar, T. P. Albright, X. Yang, J. Li, C. Xia, J. Wu, and S. Yu. 2021. Prioritizing conservation of biodiversity in an alpine region: Distribution pattern and conservation status of seed plants in the Qinghai-Tibetan Plateau. Global Ecology and Conservation 32: e01885. https://doi.org/10.1016/j.gecco.2021.e01885

The Qinghai-Tibetan Plateau (QTP) harbors abundant and diverse plant life owing to its high habitat heterogeneity. However, the distribution pattern of biodiversity hotspots and their conservation status remain unclear. Based on 148,283 high-resolution occurrence coordinates of 13,450 seed plants, w…

Grattarola, F., G. Botto, I. da Rosa, N. Gobel, E. González, J. González, D. Hernández, et al. 2019. Biodiversidata: An Open-Access Biodiversity Database for Uruguay. Biodiversity Data Journal 7. https://doi.org/10.3897/bdj.7.e36226

The continental and marine territories of Uruguay are characterised by a rich convergence of multiple biogeographic ecoregions of the Neotropics, making this country a peculiar biodiversity spot. However, despite the biological significance of Uruguay for the South American subcontinent, the distrib…