Science Enabled by Specimen Data

Niza, H., Bento, M., Lopes, L., Cartaxana, A., & Correia, A. (2021). A picture is worth a thousand words: using digital tools to visualise marine invertebrate diversity data along the coasts of Mozambique and São Tomé & Príncipe. Biodiversity Data Journal, 9. doi:10.3897/bdj.9.e68817 https://doi.org/10.3897/bdj.9.e68817

The amount of biological data available in online repositories is increasing at an exponential rate. However, data on marine invertebrate biodiversity resources from Mozambique and São Tomé and Príncipe are still sparse and scattered. Online repositories are useful instruments for biodiversity resea…

随机森林(Random forest)模型在2001年发表后得到广泛的关注。由于随机森林可以进行回归和判别等多种统计分析,而且不受正态性、方差齐性和自变量独立性等参数检验的前提条件的制约,其应用日益普遍,有被看作万能模型的趋势。实际上,随机森林是一种特点鲜明的模型,应用局部优化拟合观察值,在分析有偏效应关系的数据时,其结果往往不准确。本文以蝉科(Cicadidea)物种的分布数据为例,比较了随机森林在回归分析时与多元线性回归、广义可加模型和人工神经网络模型的差别,在判别分析时与线性判别分析的差别,强调了随机森林预测时的碎片化特点。结果显示随机森林在处理有多元共线性和交互作用的数据时,以及在判别…

Iannella, M., D’Alessandro, P., & Biondi, M. (2019). Entomological knowledge in Madagascar by GBIF datasets: estimates on the coverage and possible biases (Insecta). Fragmenta Entomologica, 51(1), 1–10. doi:10.4081/fe.2019.329 https://doi.org/10.4081/fe.2019.329

Although Madagascar is one of the world’s most important biodiversity hotspots, the knowledge of its faunistic diversity is still incomplete, notwithstanding many field campaigns were organized since the 17th century until nowadays, leading to a huge number of vertebrate and invertebrate records. In…

Li, X., Li, B., Wang, G., Zhan, X., & Holyoak, M. (2020). Deeply digging the interaction effect in multiple linear regressions using a fractional-power interaction term. MethodsX, 7, 101067. doi:10.1016/j.mex.2020.101067 https://doi.org/10.1016/j.mex.2020.101067

In multiple regression Y ~ β0 + β1X1 + β2X2 + β3X1 X2 + ɛ., the interaction term is quantified as the product of X1 and X2. We developed fractional-power interaction regression (FPIR), using βX1M X2N as the interaction term. The rationale of FPIR is that the slopes of Y-X1 regression along the X2 gr…

Carrasco, J., Price, V., Tulloch, V., & Mills, M. (2020). Selecting priority areas for the conservation of endemic trees species and their ecosystems in Madagascar considering both conservation value and vulnerability to human pressure. Biodiversity and Conservation. doi:10.1007/s10531-020-01947-1 https://doi.org/10.1007/s10531-020-01947-1

Madagascar is one of the most biodiverse countries in Africa, due to its level of endemism and species diversity. However, the pressure of human activities threatens the last patches of natural vegetation in the country and conservation decisions are undertaken with limited data availability. In thi…

Park, D. S., & Razafindratsima, O. H. (2018). Anthropogenic threats can have cascading homogenizing effects on the phylogenetic and functional diversity of tropical ecosystems. Ecography, 42(1), 148–161. doi:10.1111/ecog.03825 https://doi.org/10.1111/ecog.03825

Determining the mechanisms that underlie species distributions and assemblages is necessary to effectively preserve biodiversity. This cannot be accomplished by examining a single taxonomic group, as communities comprise a plethora of interactions across species and trophic levels. Here, we examine …