Science Enabled by Specimen Data
Lee, F., N. C. Boddy, M. Bloxham, A. R. McIntosh, G. L. W. Perry, and K. S. Simon. 2023. Spatiotemporal patterns of research on Southern Hemisphere amphidromous galaxiids: A semi–quantitative review. Austral Ecology. https://doi.org/10.1111/aec.13315
Amphidromy is a distinctive life‐history strategy of some fish species that involves spawning in fresh or brackish water followed by dispersal to sea by newly hatched larvae, where they develop for a short period. Individuals then return to freshwater as juveniles, where they feed and grow, before maturing and spawning. Six amphidromous species from the Southern Hemisphere genus Galaxias (G. truttaceus, G. fasciatus, G. argenteus, G. postvectis, G. brevipinnis, G. maculatus) are recreationally, culturally, and economically important as the juveniles are harvested. Due to ongoing population declines and a lack of critical demographic information, there is growing concern about the management of the species. Here, we used semi‐quantitative review, culturomics, and bibliometric tools to analyse peer‐reviewed research conducted on the six amphidromous species of Galaxias to: (i) understand how spatiotemporal patterns of research have shifted over the last five decades, and (ii) identify critical research gaps. Forty percent of studies (n = 295) covered a spatial extent of 10 km or less and 87% of studies lasted less than 2 years – studies were largely small and short relative to the species' ranges and their longevity. Additionally, we found important research gaps; for example, studies on the effects of climate change and the associated effects of disturbance, and the marine phase are scarce in the peer‐reviewed literature. Finally, we suggest that quantitative models have been underutilized as tools for studying amphidromous galaxiids and should be embraced to answer questions not readily addressed with field and laboratory‐based techniques. If these species are to be effectively managed, their population dynamics across spatiotemporal scales must be understood and critical and long‐standing gaps in research knowledge addressed.
Strona, G., P. S. A. Beck, M. Cabeza, S. Fattorini, F. Guilhaumon, F. Micheli, S. Montano, et al. 2021. Ecological dependencies make remote reef fish communities most vulnerable to coral loss. Nature Communications 12. https://doi.org/10.1038/s41467-021-27440-z
Ecosystems face both local hazards, such as over-exploitation, and global hazards, such as climate change. Since the impact of local hazards attenuates with distance from humans, local extinction risk should decrease with remoteness, making faraway areas safe havens for biodiversity. However, isolat…
Hughes, A. C., M. C. Orr, K. Ma, M. J. Costello, J. Waller, P. Provoost, Q. Yang, et al. 2021. Sampling biases shape our view of the natural world. Ecography 44: 1259–1269. https://doi.org/10.1111/ecog.05926
Spatial patterns of biodiversity are inextricably linked to their collection methods, yet no synthesis of bias patterns or their consequences exists. As such, views of organismal distribution and the ecosystems they make up may be incorrect, undermining countless ecological and evolutionary studies.…
Wieringa, J. G., B. C. Carstens, and H. L. Gibbs. 2021. Predicting migration routes for three species of migratory bats using species distribution models. PeerJ 9: e11177. https://doi.org/10.7717/peerj.11177
Understanding seasonal variation in the distribution and movement patterns of migratory species is essential to monitoring and conservation efforts. While there are many species of migratory bats in North America, little is known about their seasonal movements. In terms of conservation, this is impo…
Oegelund Nielsen, R., R. da Silva, J. Juergens, J. Staerk, L. Lindholm Sørensen, J. Jackson, S. Q. Smeele, and D. A. Conde. 2020. Standardized data to support conservation prioritization for sharks and batoids (Elasmobranchii). Data in Brief 33: 106337. https://doi.org/10.1016/j.dib.2020.106337
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Li, X., B. Li, G. Wang, X. Zhan, and M. Holyoak. 2020. Deeply digging the interaction effect in multiple linear regressions using a fractional-power interaction term. MethodsX 7: 101067. https://doi.org/10.1016/j.mex.2020.101067
In multiple regression Y ~ β0 + β1X1 + β2X2 + β3X1 X2 + ɛ., the interaction term is quantified as the product of X1 and X2. We developed fractional-power interaction regression (FPIR), using βX1M X2N as the interaction term. The rationale of FPIR is that the slopes of Y-X1 regression along the X2 gr…
Moudrý, V., and R. Devillers. 2020. Quality and usability challenges of global marine biodiversity databases: An example for marine mammal data. Ecological Informatics 56: 101051. https://doi.org/10.1016/j.ecoinf.2020.101051
Knowing spatial and temporal patterns of species distribution is paramount to support marine species persistence. While datasets provided by global aggregators are increasingly rich and useful, they suffer from various types of data quality issues that can impact their usage. Using marine mammals as…
Weterings, R., M. Barbetti, and H. L. Buckley. 2019. Hypothesis: Do invasive house geckos exacerbate dengue fever epidemics? Biological Invasions 21: 3533–3543. https://doi.org/10.1007/s10530-019-02066-x
Dengue fever is a mosquito-borne disease that has undergone a marked rise in incidence since the 1950s, throughout the world’s tropical regions. Here, we present a hypothesis that this rise in incidence may have been exacerbated by the invasion of house geckos, due to their role in the mosquito vect…
Guedes, T. B., R. J. Sawaya, A. Zizka, S. Laffan, S. Faurby, R. A. Pyron, R. S. Bérnils, et al. 2017. Patterns, biases and prospects in the distribution and diversity of Neotropical snakes. Global Ecology and Biogeography 27: 14–21. https://doi.org/10.1111/geb.12679
Motivation: We generated a novel database of Neotropical snakes (one of the world’s richest herpetofauna) combining the most comprehensive, manually compiled distribution dataset with publicly available data. We assess, for the first time, the diversity patterns for all Neotropical snakes as well as…