Science Enabled by Specimen Data

Lima, V. P., R. A. Ferreira de Lima, F. Joner, L. D’Orangeville, N. Raes, I. Siddique, and H. ter Steege. 2023. Integrating climate change into agroforestry conservation: A case study on native plant species in the Brazilian Atlantic Forest. Journal of Applied Ecology. https://doi.org/10.1111/1365-2664.14464

Designing multispecies systems with suitable climatic affinity and identifying species' vulnerability under human‐driven climate change are current challenges to achieve successful adaptation of natural systems. To address this problem, we need to (1) identify groups of species with climatic similarity under climate scenarios and (2) identify areas with high conservation value under predicted climate change.To recognize species with similar climatic niche requirements that can be grouped for mixed cropping in Brazil, we employed ecological niche models (ENMs) and Spearman's ρ for overlap. We also used prioritization algorithms to map areas of high conservation value using two Shared Socioeconomic Pathways (SSP2‐4.5 and SSP5‐8.5) to assess mid‐term (2041–2060) and long‐term (2061–2080) climate change impacts.We identified 15 species groups with finer climatic affinities at different times depicted on hierarchical clustering dendrograms, which can be combined into agroecological agroforestry systems. Furthermore, we highlight the climatically suitable areas for these groups of species, thus providing an outlook of where different species will need to be planted over time to be conserved. In addition, we observed that climate change is predicted to modify the spatial association of these groups under different future climate scenarios, causing a mean negative change in species climatic similarity of 9.5% to 13.7% under SSP2‐4.5 scenario and 9.5% to 10.5% under SSP5‐8.5, for 2041–2060 and 2061–2080, respectively.Synthesis and applications. Our findings provide a framework for agroforestry conservation. The groups of species with finer climatic affinities identified and the climatically suitable areas can be combined into agroecological productive systems, and provide an outlook of where different species may be planted over time. In addition, the conservation priority zones displaying high climate stability for each species individually and all at once can be incorporated into Brazil's conservation plans by policymakers to prioritize specific sites. Lastly, we urge policymakers, conservation organizations and donors to promote interventions involving farmers and local communities, since the species' evaluated have proven to maintain landscapes with productive forest fragments and can be conserved in different Brazilian ecosystems.

Ramirez-Villegas, J., C. K. Khoury, H. A. Achicanoy, M. V. Diaz, A. C. Mendez, C. C. Sosa, Z. Kehel, et al. 2022. State of ex situ conservation of landrace groups of 25 major crops. Nature Plants 8: 491–499. https://doi.org/10.1038/s41477-022-01144-8

Crop landraces have unique local agroecological and societal functions and offer important genetic resources for plant breeding. Recognition of the value of landrace diversity and concern about its erosion on farms have led to sustained efforts to establish ex situ collections worldwide. The degree to which these efforts have succeeded in conserving landraces has not been comprehensively assessed. Here we modelled the potential distributions of eco-geographically distinguishable groups of landraces of 25 cereal, pulse and starchy root/tuber/fruit crops within their geographic regions of diversity. We then analysed the extent to which these landrace groups are represented in genebank collections, using geographic and ecological coverage metrics as a proxy for genetic diversity. We find that ex situ conservation of landrace groups is currently moderately comprehensive on average, with substantial variation among crops; a mean of 63% ± 12.6% of distributions is currently represented in genebanks. Breadfruit, bananas and plantains, lentils, common beans, chickpeas, barley and bread wheat landrace groups are among the most fully represented, whereas the largest conservation gaps persist for pearl millet, yams, finger millet, groundnut, potatoes and peas. Geographic regions prioritized for further collection of landrace groups for ex situ conservation include South Asia, the Mediterranean and West Asia, Mesoamerica, sub-Saharan Africa, the Andean mountains of South America and Central to East Asia. With further progress to fill these gaps, a high degree of representation of landrace group diversity in genebanks is feasible globally, thus fulfilling international targets for their ex situ conservation. By analysing the state of representation of traditional varieties of 25 major crops in ex situ repositories, this study demonstrates conservation progress made over more than a half-century and identifies the gaps remaining to be filled.

Xue, T., S. R. Gadagkar, T. P. Albright, X. Yang, J. Li, C. Xia, J. Wu, and S. Yu. 2021. Prioritizing conservation of biodiversity in an alpine region: Distribution pattern and conservation status of seed plants in the Qinghai-Tibetan Plateau. Global Ecology and Conservation 32: e01885. https://doi.org/10.1016/j.gecco.2021.e01885

The Qinghai-Tibetan Plateau (QTP) harbors abundant and diverse plant life owing to its high habitat heterogeneity. However, the distribution pattern of biodiversity hotspots and their conservation status remain unclear. Based on 148,283 high-resolution occurrence coordinates of 13,450 seed plants, w…

Catarino, S., M. Brilhante, A. P. Essoh, A. B. Charrua, J. Rangel, G. Roxo, E. Varela, et al. 2021. Exploring physicochemical and cytogenomic diversity of African cowpea and common bean. Scientific Reports 11. https://doi.org/10.1038/s41598-021-91929-2

In sub-Saharan Africa, grain legumes (pulses) are essential food sources and play an important role in sustainable agriculture. Among the major pulse crops, the native cowpea (Vigna unguiculata) and introduced common bean (Phaseolus vulgaris) stand out. This paper has two main goals. First, we provi…

Mazijk, R., M. D. Cramer, and G. A. Verboom. 2021. Environmental heterogeneity explains contrasting plant species richness between the South African Cape and southwestern Australia. Journal of Biogeography 48: 1875–1888. https://doi.org/10.1111/jbi.14118

Aim: Given the importance of environmental heterogeneity as a driver of species richness through its effects on species diversification and coexistence, we asked whether the dramatic difference in species richness per unit area between two similar Mediterranean‐type biodiversity hotspots is explaine…

Canavan, S., D. M. Richardson, J. J. Le Roux, S. A. Kelchner, and J. R. U. Wilson. 2021. The status of alien bamboos in South Africa. South African Journal of Botany 138: 33–40. https://doi.org/10.1016/j.sajb.2020.11.027

The growing interest in commercial cultivation of bamboos (Poaceae subfamily Bambusoideae) has led to the introduction of new alien species into South Africa. The rate at which bamboos are being planted in South Africa is a cause for concern because of the impacts of bamboo invasions in other parts …

Farooq, H., J. A. R. Azevedo, A. Soares, A. Antonelli, and S. Faurby. 2020. Mapping Africa’s Biodiversity: More of the Same Is Just Not Good Enough S. Ruane [ed.],. Systematic Biology 70: 623–633. https://doi.org/10.1093/sysbio/syaa090

Species distribution data are fundamental to the understanding of biodiversity patterns and processes. Yet, such data are strongly affected by sampling biases, mostly related to site accessibility. The understanding of these biases is therefore crucial in systematics, biogeography and conservation. …

Brightly, W. H., S. E. Hartley, C. P. Osborne, K. J. Simpson, and C. A. E. Strömberg. 2020. High silicon concentrations in grasses are linked to environmental conditions and not associated with C 4 photosynthesis. Global Change Biology 26: 7128–7143. https://doi.org/10.1111/gcb.15343

The uptake and deposition of silicon (Si) as silica phytoliths is common among land plants and is associated with a variety of functions. Among these, herbivore defense has received significant attention, particularly with regards to grasses and grasslands. Grasses are well known for their high sili…

Jahanshiri, E., N. M. Mohd Nizar, T. A. S. Tengku Mohd Suhairi, P. J. Gregory, A. S. Mohamed, E. M. Wimalasiri, and S. N. Azam-Ali. 2020. A Land Evaluation Framework for Agricultural Diversification. Sustainability 12: 3110. https://doi.org/10.3390/su12083110

Shortlisting ecologically adaptable plant species can be a starting point for agricultural diversification projects. We propose a rapid assessment framework based on an ecological model that can accelerate the evaluation of options for sustainable crop diversification. To test the new model, expert-…

Ringelberg, J. J., N. E. Zimmermann, A. Weeks, M. Lavin, and C. E. Hughes. 2020. Biomes as evolutionary arenas: Convergence and conservatism in the trans‐continental succulent biome A. Moles [ed.],. Global Ecology and Biogeography 29: 1100–1113. https://doi.org/10.1111/geb.13089

Aim: Historically, biomes have been defined based on their structurally and functionally similar vegetation, but there is debate about whether these similarities are superficial, and about how biomes are defined and mapped. We propose that combined assessment of evolutionary convergence of plant fun…