Science Enabled by Specimen Data

Miller, E. F., Green, R. E., Balmford, A., Maisano Delser, P., Beyer, R., Somveille, M., … Manica, A. (2021). Bayesian Skyline Plots disagree with range size changes based on Species Distribution Models for Holarctic birds. Molecular Ecology. doi:10.1111/mec.16032 https://doi.org/10.1111/mec.16032

During the Quaternary, large climate oscillations impacted the distribution and demography of species globally. Two approaches have played a major role in reconstructing changes through time: Bayesian Skyline Plots (BSPs), which reconstruct population fluctuations based on genetic data, and Species …

Wieringa, J. G., Carstens, B. C., & Gibbs, H. L. (2021). Predicting migration routes for three species of migratory bats using species distribution models. PeerJ, 9, e11177. doi:10.7717/peerj.11177 https://doi.org/10.7717/peerj.11177

Understanding seasonal variation in the distribution and movement patterns of migratory species is essential to monitoring and conservation efforts. While there are many species of migratory bats in North America, little is known about their seasonal movements. In terms of conservation, this is impo…

Inman, R., Franklin, J., Esque, T., & Nussear, K. (2021). Comparing sample bias correction methods for species distribution modeling using virtual species. Ecosphere, 12(3). doi:10.1002/ecs2.3422 https://doi.org/10.1002/ecs2.3422

A key assumption in species distribution modeling (SDM) with presence‐background (PB) methods is that sampling of occurrence localities is unbiased and that any sampling bias is proportional to the background distribution of environmental covariates. This assumption is rarely met when SDM practition…

Azevedo, J. A. R., Guedes, T. B., Nogueira, C. de C., Passos, P., Sawaya, R. J., Prudente, A. L. C., … Antonelli, A. (2019). Museums and cradles of diversity are geographically coincident for narrowly distributed Neotropical snakes. Ecography, 43(2), 328–339. doi:10.1111/ecog.04815 https://doi.org/10.1111/ecog.04815

Factors driving the spatial configuration of centres of endemism have long been a topic of broad interest and debate. Due to different eco‐evolutionary processes, these highly biodiverse areas may harbour different amounts of ancient and recently diverged organisms (paleo‐ and neo‐endemism, respecti…

Espíndola, A., Ruffley, M., Smith, M. L., Carstens, B. C., Tank, D. C., & Sullivan, J. (2016). Identifying cryptic diversity with predictive phylogeography. Proceedings of the Royal Society B: Biological Sciences, 283(1841), 20161529. doi:10.1098/rspb.2016.1529 https://doi.org/10.1098/rspb.2016.1529

Identifying units of biological diversity is a major goal of organismal biology. An increasing literature has focused on the importance of cryptic diversity, defined as the presence of deeply diverged lineages within a single species. While most discoveries of cryptic lineages proceed on a taxon-by-…

Li, X., Li, B., Wang, G., Zhan, X., & Holyoak, M. (2020). Deeply digging the interaction effect in multiple linear regressions using a fractional-power interaction term. MethodsX, 7, 101067. doi:10.1016/j.mex.2020.101067 https://doi.org/10.1016/j.mex.2020.101067

In multiple regression Y ~ β0 + β1X1 + β2X2 + β3X1 X2 + ɛ., the interaction term is quantified as the product of X1 and X2. We developed fractional-power interaction regression (FPIR), using βX1M X2N as the interaction term. The rationale of FPIR is that the slopes of Y-X1 regression along the X2 gr…

Cardador, L., & Blackburn, T. M. (2020). A global assessment of human influence on niche shifts and risk predictions of bird invasions. Global Ecology and Biogeography. doi:10.1111/geb.13166 https://doi.org/10.1111/geb.13166

Aim: Estimating the strength of niche conservatism is key for predictions of invasion risk. Most studies consider only the climatic niche, but other factors, such as human disturbance, also shape niches. Whether occupation of human habitats in the alien range depends on the native tolerances of spec…

Rotenberry, J. T., & Balasubramaniam, P. (2020). Connecting species’ geographical distributions to environmental variables: range maps versus observed points of occurrence. Ecography. doi:10.1111/ecog.04871 https://doi.org/10.1111/ecog.04871

Connecting the geographical occurrence of a species with underlying environmental variables is fundamental for many analyses of life history evolution and for modeling species distributions for both basic and practical ends. However, raw distributional information comes principally in two forms: poi…

Prieto-Torres, D. A., Lira-Noriega, A., & Navarro-Sigüenza, A. G. (2020). Climate change promotes species loss and uneven modification of richness patterns in the avifauna associated to Neotropical seasonally dry forests. Perspectives in Ecology and Conservation. doi:10.1016/j.pecon.2020.01.002 https://doi.org/10.1016/j.pecon.2020.01.002

We assessed the effects of global climate change as a driver of spatio-temporal biodiversity patterns in bird assemblages associated to Neotropical seasonally dry forests (NSDF). For this, we estimated the geographic distribution of 719 bird species under current and future climate (2050 and 2070) p…

Zink, R. M., Botero-Cañola, S., Martinez, H., & Herzberg, K. M. (2020). Niche modeling reveals life history shifts in birds at La Brea over the last twenty millennia. PLOS ONE, 15(1), e0227361. doi:10.1371/journal.pone.0227361 https://doi.org/10.1371/journal.pone.0227361

A species presence at a particular site can change over time, resulting in temporally dynamic species pools. Ecological niche models provide estimates of species presence at different time intervals. The avifauna of La Brea includes approximately 120 species dating to approximately 15,000 years ago.…